miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48668_iba-miR157:pmrd
Length = 283
Score = 141 bits (71), Expect = 5e-34
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 109 ccatgagagtcatatgtaattttacggcggcgctcattgtgacctgccaaacgccttcgg 168
|||||||| |||||||||||| | |||||||||||||||||||||||||| ||||| |||
Sbjct: 134 ccatgagaatcatatgtaattctccggcggcgctcattgtgacctgccaatcgcctccgg 193
Query: 169 caactcctcttagcatcatcaaactctgctaacagatgaaatctgctacattgctgacag 228
|||||||||||||| |||||||||| ||||| |||||| ||||| ||||||||||||
Sbjct: 194 caactcctcttagcttcatcaaactgggctaattcatgaaacctgctgcattgctgacag 253
Query: 229 aatcgct 235
|| ||||
Sbjct: 254 aagcgct 260
Score = 48.1 bits (24), Expect = 6e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcatgct 24
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcatgct 24
>54535_sly-miR157a:pmrd
Length = 53
Score = 105 bits (53), Expect = 3e-23
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcatgcttaacccacatcttgtttatgttgcttcag 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcatgcttaacccacatcttgtttatgttgcttcag 53
>48670_ini-miR157b:pmrd
Length = 183
Score = 58.0 bits (29), Expect = 6e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 118 tcatatgtaattttacggcggcgctcattgtgacctgccaa 158
|||||||||||| | | ||||||||||||||||||||||||
Sbjct: 143 tcatatgtaattctcctgcggcgctcattgtgacctgccaa 183
Score = 48.1 bits (24), Expect = 6e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcatgct 24
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcatgct 24
>48669_ini-miR157a:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 6e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcatgct 24
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcatgct 24
>54537_sly-miR157c:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 4e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcat 21
|||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagcat 123
>51323_pco-miR157:pmrd
Length = 184
Score = 42.1 bits (21), Expect = 4e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcat 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcat 21
>48677_lja-miR157c:pmrd
Length = 460
Score = 42.1 bits (21), Expect = 4e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcat 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcat 21
