miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54539_sly-miR158b:pmrd
          Length = 74

 Score = 99.6 bits (50), Expect = 2e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 1  ttccctttcacatcaagcaattgcaaatgatccaaatgtagacaaagcaa 50
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 ttccctttcacatcaagcaattgcaaatgatccaaatgtagacaaagcaa 74

>48394_bra-miR158:pmrd
          Length = 96

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 31 tccaaatgtagacaaagcaa 50
          ||||||||||||||||||||
Sbjct: 63 tccaaatgtagacaaagcaa 82

>48385_bol-miR158:pmrd
          Length = 97

 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 32 ccaaatgtagacaaagcaa 50
          |||||||||||||||||||
Sbjct: 65 ccaaatgtagacaaagcaa 83

>46930_ath-miR158b:pmrd
          Length = 85

 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 32 ccaaatgtagacaaagcaa 50
          |||||||||||||||||||
Sbjct: 58 ccaaatgtagacaaagcaa 76

>46929_ath-miR158a:pmrd
          Length = 100

 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 32 ccaaatgtagacaaagcaa 50
          |||||||||||||||||||
Sbjct: 65 ccaaatgtagacaaagcaa 83