miRNEST 2.0, an integrative microRNA resource :: BLAST
>54628_sof-miR159a:pmrd
Length = 265
Score = 488 bits (246), Expect = e-138
Identities = 262/266 (98%), Gaps = 1/266 (0%)
Strand = Plus / Plus
Query: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
Query: 61 tggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
Query: 121 ttttcggagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttg 180
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 ttttcg-agagggaggagaggagctagactctcatggtggtcgtctttgagataggcttg 179
Query: 181 tggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggg 239
Query: 241 agctctgcatcctgaaccatccatcc 266
||||||||||||||| ||||||||||
Sbjct: 240 agctctgcatcctgatccatccatcc 265
>54632_sof-miR159e:pmrd
Length = 264
Score = 456 bits (230), Expect = e-129
Identities = 260/266 (97%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
Query: 62 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
Query: 122 tttcggagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgt 181
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttc-gagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgt 179
Query: 182 ggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggga 241
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 180 ggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaagga 239
Query: 242 gctc-tgcatcctgaaccatccatcc 266
|||| ||||| |||| ||||||||||
Sbjct: 240 gctcttgcat-ctgatccatccatcc 264
>54631_sof-miR159d:pmrd
Length = 265
Score = 456 bits (230), Expect = e-129
Identities = 258/266 (96%), Gaps = 1/266 (0%)
Strand = Plus / Plus
Query: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
Query: 61 tggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
Query: 121 ttttcggagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttg 180
||||| |||||||||||||||||||||||||||| || |||||||| ||||||| |||||
Sbjct: 121 ttttc-gagagggaggagaggagctagactctcatgggggtcgtctatgagatacgcttg 179
Query: 181 tggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaaggg 239
Query: 241 agctctgcatcctgaaccatccatcc 266
||||||||||||||| ||||||||||
Sbjct: 240 agctctgcatcctgatccatccatcc 265
>54930_zma-miR159a:pmrd
Length = 246
Score = 180 bits (91), Expect = 4e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 161 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctgg 220
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 141 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 200
Query: 221 ccgctctttggattgaagggagctctgcatcctga 255
|||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgctctttggattgaagggagctctgcatcctga 235
Score = 159 bits (80), Expect = 1e-39
Identities = 96/100 (96%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttcc 67
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 9 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 68
Query: 68 gctgctcgttcatggttcccactatcctatctcatcatgt 107
||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gctgctcgttcatggttcccactatcctatctcatcatgt 108
>51338_pgl-miR159:pmrd
Length = 226
Score = 153 bits (77), Expect = 8e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 167 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctc 226
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc 205
Query: 227 tttggattgaagggagctctg 247
|||||||||||||||||||||
Sbjct: 206 tttggattgaagggagctctg 226
Score = 77.8 bits (39), Expect = 4e-15
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 21 cggagctcctatcattccaatgaagggccgttctgaagggt-ggttccgctgctcgttca 79
|||||||||||||||||||||||| || ||| | |||| ||| | ||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 80 tggttcccactatcctatctcat 102
|||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctcat 83
>54392_sar-miR159:pmrd
Length = 175
Score = 117 bits (59), Expect = 5e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 169 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 228
||||||||| ||||| ||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 229 tggattgaagggagctctg 247
|||||||||||||||||||
Sbjct: 157 tggattgaagggagctctg 175
Score = 73.8 bits (37), Expect = 6e-14
Identities = 69/77 (89%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 22 ggagctcctatcattccaatgaagggccgttct-gaa-gggtggttccgctgctcgttca 79
||||||||||||||||||||||| || | | || ||| ||||||| | ||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61
Query: 80 tggttcccactatccta 96
|||||||||||||||||
Sbjct: 62 tggttcccactatccta 78
>54931_zma-miR159b:pmrd
Length = 221
Score = 107 bits (54), Expect = 4e-24
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 167 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 225
||||||| ||||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgca-cgtccccttcgttgaccgct 180
Query: 226 ctttggattgaagggagctctgcatc 251
|||||||||||||||||||||||||
Sbjct: 181 gtttggattgaagggagctctgcatc 206
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 52 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 104
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 52 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 104
>54934_zma-miR159e:pmrd
Length = 203
Score = 93.7 bits (47), Expect = 7e-20
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 167 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 225
||||||| |||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 121 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 180
Query: 226 ctttggattgaagggagctctgc 248
|||||| |||||||||||||||
Sbjct: 181 gtttggagtgaagggagctctgc 203
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 52 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 104
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 34 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 86
>48820_osa-miR159b:pmrd
Length = 188
Score = 93.7 bits (47), Expect = 7e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 169 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 228
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 229 tggattgaagggagctctgcatc 251
|||||||||||||||||||||||
Sbjct: 160 tggattgaagggagctctgcatc 182
Score = 69.9 bits (35), Expect = 1e-12
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 16 tgaagcggagctcctatcattccaatgaagggccgttctgaagggtggttccgctgctcg 75
||||| ||||||||| || |||||||||| || ||||||||||| | | |||||| |
Sbjct: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttg 65
Query: 76 ttcatggttcccactatcctatctcat 102
||||||||||||||||| |||||||||
Sbjct: 66 ttcatggttcccactattctatctcat 92
>48657_hvv-miR159b:pmrd
Length = 174
Score = 85.7 bits (43), Expect = 2e-17
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 169 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 228
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 229 tggattgaagggagctctg 247
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctctg 174
Score = 71.9 bits (36), Expect = 2e-13
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 22 ggagctcctatcattccaatgaagggccgttctgaagggtg-gttccgctgctcgttcat 80
|||||||||||||||||||||||||| | | ||||||| || | |||||| ||||||
Sbjct: 2 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttcat 61
Query: 81 ggttcccactatcctatctc 100
||||||||||||||||||||
Sbjct: 62 ggttcccactatcctatctc 81
>54673_tae-miR159a:pmrd
Length = 177
Score = 83.8 bits (42), Expect = 6e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 169 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 228
|||| |||| ||||||||||||||||||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 229 tggattgaagggagctctgcat 250
||||||||||||||||||||||
Sbjct: 156 tggattgaagggagctctgcat 177
Score = 79.8 bits (40), Expect = 1e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 22 ggagctcctatcattccaatgaagggccgttctgaagggtg-gttccgctgctcgttcat 80
|||||||||||||||||||||||||| | | ||||||| || | |||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttcat 62
Query: 81 ggttcccactatcctatctc 100
||||||||||||||||||||
Sbjct: 63 ggttcccactatcctatctc 82
>54653_spr-miR159:pmrd
Length = 392
Score = 67.9 bits (34), Expect = 4e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctctgcatcctgaaccatccat 264
||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatccatccat 38
>54937_zma-miR159m:pmrd
Length = 457
Score = 58.0 bits (29), Expect = 4e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctctgcatcctga 255
|||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctga 29
>54674_tae-miR159b:pmrd
Length = 255
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 224 ctctttggattgaagggagctctgcatc 251
||||||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgcatc 254
>48819_osa-miR159a:pmrd
Length = 272
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 224 ctctttggattgaagggagctctgcatc 251
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48796_oru-miR159:pmrd
Length = 274
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 224 ctctttggattgaagggagctctgcatc 251
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48656_hvv-miR159a:pmrd
Length = 303
Score = 50.1 bits (25), Expect = 9e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctctgcatc 251
|||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatc 25
>48825_osa-miR159m:pmrd
Length = 249
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 224 ctctttggattgaagggagctctg 247
||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
>46932_ath-miR159b:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 225 tctttggattgaagggagctctgcatc 251
|||||||||||||||||||||| ||||
Sbjct: 166 tctttggattgaagggagctcttcatc 192
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 tctttggattgaagggagctct 246
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 tctttggattgaagggagctct 246
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 tctttggattgaagggagctct 246
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 tctttggattgaagggagctct 246
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 tctttggattgaagggagctct 246
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 tctttggattgaagggagctct 246
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 tctttggattgaagggagctct 246
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctctgcatc 251
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctacatc 25
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctct 246
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctct 246
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctct 246
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctct 246
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctct 246
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctct 246
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48728_mtr-miR319b:pmrd
Length = 42
Score = 40.1 bits (20), Expect = 9e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 228 ttggattgaagggagctctgcatc 251
||||||||||||||||||| ||||
Sbjct: 1 ttggattgaagggagctctacatc 24
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 227 tttggattgaagggagctct 246
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
