miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54630_sof-miR159c:pmrd
Length = 238
Score = 349 bits (176), Expect = 4e-97
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 103
Query: 61 gatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgac 163
Query: 121 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 219
>54403_sbi-miR159b:pmrd
Length = 253
Score = 341 bits (172), Expect = 1e-94
Identities = 175/176 (99%)
Strand = Plus / Plus
Query: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 118
Query: 61 gatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgac 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 119 gatgcctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgac 178
Query: 121 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 234
>55054_zma-miR319m:pmrd
Length = 178
Score = 276 bits (139), Expect = 5e-75
Identities = 169/178 (94%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 61 gatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatg 118
||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 61 gatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatg 120
Query: 119 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 178
>54936_zma-miR159g:pmrd
Length = 180
Score = 276 bits (139), Expect = 5e-75
Identities = 169/178 (94%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 61
Query: 61 gatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatg 118
||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 62 gatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatg 121
Query: 119 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 acccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 179
>54932_zma-miR159c:pmrd
Length = 217
Score = 276 bits (139), Expect = 5e-75
Identities = 169/178 (94%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 80
Query: 61 gatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatg 118
||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 81 gatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatg 140
Query: 119 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 acccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 198
>54933_zma-miR159d:pmrd
Length = 217
Score = 268 bits (135), Expect = 1e-72
Identities = 168/178 (94%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 21 aagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatg 80
Query: 61 gatgcctctctggtgcagcaatgactaa--tgctcacctgcacttgcatgggtgtgcatg 118
||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 81 gatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatg 140
Query: 119 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 acccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctcct 198
>54935_zma-miR159f:pmrd
Length = 181
Score = 238 bits (120), Expect = 1e-63
Identities = 166/179 (92%), Gaps = 3/179 (1%)
Strand = Plus / Plus
Query: 1 aagagctcccttcgatccaatccagg-aggggaagtggtcggttgcagctgccggttcat 59
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 2 aagagctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttcat 61
Query: 60 ggatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcat 117
|||| | ||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 62 ggatacttctctggtgcagcaatggccgcagctcacctctgcacttgcatgggtgtgcat 121
Query: 118 gacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 180
>48824_osa-miR159f:pmrd
Length = 188
Score = 131 bits (66), Expect = 2e-31
Identities = 146/172 (84%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 63 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 122
| ||||| |||| ||| | | ||| ||||||||||||||| ||||||||||
Sbjct: 73 tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124
Query: 123 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 174
|||||||||||||||||| |||| | || |||||||||||||||||||||
Sbjct: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>48821_osa-miR159c:pmrd
Length = 197
Score = 99.6 bits (50), Expect = 7e-22
Identities = 144/174 (82%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 63 tgcctctctggtgca-gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacc 121
| ||||| ||||| | | | | || ||||||||||||||||| |||||||||
Sbjct: 73 tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132
Query: 122 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 175
||||||||||||||||||| |||| | || || |||||||||||||||||||
Sbjct: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
>48822_osa-miR159d:pmrd
Length = 189
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 63 tgcctct 69
| |||||
Sbjct: 73 tacctct 79
Score = 65.9 bits (33), Expect = 1e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 95 cctgcacttgcatgggtgtgcatgacccgggagatgaacccaccatcatctttccctcgt 154
||||||||||||||||| ||||||||| |||||||||||| |||| | || | || |
Sbjct: 98 cctgcacttgcatgggtttgcatgacctgggagatgaacctgccattgtgttcctctatt 157
Query: 155 gcttggattgaagggagctcc 175
| |||||||||||||||||||
Sbjct: 158 gattggattgaagggagctcc 178
>48823_osa-miR159e:pmrd
Length = 191
Score = 83.8 bits (42), Expect = 4e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 aagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 59
|||||||||||| ||||||||| |||||| ||||||||| || |||||||||||||||||
Sbjct: 11 aagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcat 70
Query: 60 ggatgcctct 69
|||| |||||
Sbjct: 71 ggatacctct 80
>51605_ptc-miR159d:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 156 cttggattgaagggagctcct 176
|||||||||||||||||||||
Sbjct: 165 cttggattgaagggagctcct 185
>54573_smo-miR159:pmrd
Length = 279
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 156 cttggattgaagggagctcc 175
||||||||||||||||||||
Sbjct: 249 cttggattgaagggagctcc 268
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 153 gtgcttggattgaagggagctcct 176
||||||||| ||||||||||||||
Sbjct: 172 gtgcttggactgaagggagctcct 195
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 153 gtgcttggattgaagggagctcct 176
||||||||| ||||||||||||||
Sbjct: 170 gtgcttggactgaagggagctcct 193
>51562_pta-miR319:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 156 cttggattgaagggagctcc 175
||||||||||||||||||||
Sbjct: 27 cttggattgaagggagctcc 8
>51555_pta-miR159c:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 156 cttggattgaagggagctcc 175
||||||||||||||||||||
Sbjct: 49 cttggattgaagggagctcc 68
>51553_pta-miR159a:pmrd
Length = 210
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 156 cttggattgaagggagctcc 175
||||||||||||||||||||
Sbjct: 184 cttggattgaagggagctcc 203
>51547_psi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 156 cttggattgaagggagctcc 175
||||||||||||||||||||
Sbjct: 173 cttggattgaagggagctcc 192
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 153 gtgcttggattgaagggagctcct 176
||||||||| ||||||||||||||
Sbjct: 170 gtgcttggactgaagggagctcct 193
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 ttggattgaagggagctcct 176
||||||||||||||||||||
Sbjct: 196 ttggattgaagggagctcct 215
