miRNEST 2.0, an integrative microRNA resource :: BLAST
>54648_sof-miR408c:pmrd
Length = 286
Score = 200 bits (101), Expect = 3e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 241
Query: 171 cacccctgcactgcctcttccctggctccccaccgttgcccttgc 215
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
Score = 107 bits (54), Expect = 3e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 atttccgtttgcttgctcacaaaacg 94
||||| ||||||||||||||||||||
Sbjct: 98 atttctgtttgcttgctcacaaaacg 123
>54647_sof-miR408b:pmrd
Length = 286
Score = 200 bits (101), Expect = 3e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 241
Query: 171 cacccctgcactgcctcttccctggctccccaccgttgcccttgc 215
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
Score = 107 bits (54), Expect = 3e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 gtttgcttgctcacaaaacg 94
||||||||||||||||||||
Sbjct: 104 gtttgcttgctcacaaaacg 123
>54646_sof-miR408a:pmrd
Length = 283
Score = 165 bits (83), Expect = 2e-41
Identities = 100/105 (95%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 182 tggtgatggcctgacctgagacggctgagagctcagctggtgtcctg---ttgttgcttc 238
Query: 171 cacccctgcactgcctcttccctggctccccaccgttgcccttgc 215
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctcccctgcactgcctcttccctggctccccaccgttgcccttgc 283
Score = 99.6 bits (50), Expect = 8e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 73
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 atttccgtttgcttgctcacaaaacg 94
||||| ||||||||||||||||||||
Sbjct: 98 atttctgtttgcttgctcacaaaacg 123
>54650_sof-miR408e:pmrd
Length = 283
Score = 133 bits (67), Expect = 6e-32
Identities = 96/105 (91%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 182 tggtgatggcctgacctgagacggatgagagctcagctggtgtcc---tgttgttgctta 238
Query: 171 cacccctgcactgcctcttccctggctccccaccgttgcccttgc 215
| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 239 cttccctgcactgactcttccctggctccccaccgttgcccttgc 283
Score = 99.6 bits (50), Expect = 8e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 73
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 gtttgcttgctcacaaaacg 94
||||||||||||||||||||
Sbjct: 104 gtttgcttgctcacaaaacg 123
>54499_sbi-miR408:pmrd
Length = 205
Score = 113 bits (57), Expect = 6e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 137 gagagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctcttccctggc 196
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 145 gagagctcagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggc 204
Query: 197 t 197
|
Sbjct: 205 t 205
Score = 111 bits (56), Expect = 2e-25
Identities = 70/74 (94%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 22 acagggacgaggcagagcatgggatggggccat---caacaaaatttccaatttccgttt 78
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 60
Query: 79 gcttgctcacaaaa 92
|||||| |||||||
Sbjct: 61 gcttgcccacaaaa 74
>55104_zma-miR408:pmrd
Length = 191
Score = 75.8 bits (38), Expect = 1e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaa 61
||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaaa 61
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 158 gtgttgttgcttccacccctgcactgcctcttccctggctcc 199
||||||||||| || |||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggctcc 175
>48975_osa-miR408:pmrd
Length = 213
Score = 69.9 bits (35), Expect = 8e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 159 tgttgttgcttccacccctgcactgcctcttccctggctcccc 201
|||||||||| || |||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 18 ggagacagggacgaggcagagcatgggatggggccatcaaca 59
||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
>54690_tae-miR408:pmrd
Length = 187
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 174 ccctgcactgcctcttccctggctcccc 201
||||||||||||||||||||||||||||
Sbjct: 134 ccctgcactgcctcttccctggctcccc 161
Score = 40.1 bits (20), Expect = 7e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 18 ggagacagggacgaggcagagcatgggatggggccatcaacaaaattt 65
||||||||||| | |||||||| |||||| ||| | |||||||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
>54389_rco-miR408:pmrd
Length = 129
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 172 acccctgcactgcctcttccctggct 197
||||||||||||||||||||||||||
Sbjct: 86 acccctgcactgcctcttccctggct 111
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 172 acccctgcactgcctcttccctggctccc 200
|||| ||||||||||||||||||||||||
Sbjct: 30 acccatgcactgcctcttccctggctccc 2
>47031_ath-miR408:pmrd
Length = 218
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 172 acccctgcactgcctcttccctggctccc 200
|||| ||||||||||||||||||||||||
Sbjct: 116 acccatgcactgcctcttccctggctccc 144
>54892_vvi-miR408:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 172 acccctgcactgcctcttccctggctc 198
|||| ||||||||||||||||||||||
Sbjct: 73 acccatgcactgcctcttccctggctc 99
>51762_ptc-miR408:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 172 acccctgcactgcctcttccctggct 197
|||| |||||||||||||||||||||
Sbjct: 72 acccatgcactgcctcttccctggct 97
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 177 tgcactgcctcttccctggctc 198
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>48428_cpt-miR408:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 177 tgcactgcctcttccctggctc 198
||||||||||||||||||||||
Sbjct: 71 tgcactgcctcttccctggctc 92
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 177 tgcactgcctcttccctggct 197
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 177 tgcactgcctcttccctggct 197
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 177 tgcactgcctcttccctggct 197
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 177 tgcactgcctcttccctggct 197
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
