miRNEST 2.0, an integrative microRNA resource :: BLAST
>54646_sof-miR408a:pmrd
Length = 283
Score = 521 bits (263), Expect = e-149
Identities = 278/283 (98%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagacggatgagagctcagctggtgtcctgttgttgcttact 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 181 gtggtgatggcctgacctgagacggctgagagctcagctggtgtcctgttgttgcttcct 240
Query: 241 tccctgcactgactcttccctggctccccaccgttgcccttgc 283
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 cccctgcactgcctcttccctggctccccaccgttgcccttgc 283
>54647_sof-miR408b:pmrd
Length = 286
Score = 492 bits (248), Expect = e-140
Identities = 277/286 (96%), Gaps = 3/286 (1%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagacggatgagagctcagctggtgtcc---tgttgttgctt 237
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
Query: 238 acttccctgcactgactcttccctggctccccaccgttgcccttgc 283
|| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
>54648_sof-miR408c:pmrd
Length = 286
Score = 484 bits (244), Expect = e-137
Identities = 276/286 (96%), Gaps = 3/286 (1%)
Strand = Plus / Plus
Query: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatgaggccatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 agaagatgggtatggttggagacagggatgaggcagagcatgggatggggccatcaacaa 60
Query: 61 aatttccaatttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 aatttccaatttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaa 120
Query: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acggagggatttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaa 180
Query: 181 gtggtgatggcctgacctgagacggatgagagctcagctggtgtcc---tgttgttgctt 237
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 181 gtggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgctt 240
Query: 238 acttccctgcactgactcttccctggctccccaccgttgcccttgc 283
|| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 cctcccctgcactgcctcttccctggctccccaccgttgcccttgc 286
>54649_sof-miR408d:pmrd
Length = 215
Score = 133 bits (67), Expect = 8e-32
Identities = 96/105 (91%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 182 tggtgatggcctgacctgagacggatgagagctcagctggtgtcc---tgttgttgctta 238
||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
Query: 239 cttccctgcactgactcttccctggctccccaccgttgcccttgc 283
| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 171 cacccctgcactgcctcttccctggctccccaccgttgcccttgc 215
Score = 99.6 bits (50), Expect = 1e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 73
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104 gtttgcttgctcacaaaacg 123
||||||||||||||||||||
Sbjct: 75 gtttgcttgctcacaaaacg 94
>55104_zma-miR408:pmrd
Length = 191
Score = 75.8 bits (38), Expect = 2e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 61
||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaaa 61
Score = 50.1 bits (25), Expect = 9e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 227 tgttgttgcttacttccctgcactgactcttccctggctcc 267
|||||||||| || |||||||||| |||||||||||||||
Sbjct: 135 tgttgttgctccctcccctgcactgcctcttccctggctcc 175
>54499_sbi-miR408:pmrd
Length = 205
Score = 75.8 bits (38), Expect = 2e-14
Identities = 90/109 (82%), Gaps = 15/109 (13%)
Strand = Plus / Plus
Query: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagacggatgagagctcagct 219
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 109 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 156
Query: 220 ggtgtcctg---ttgttgcttacttccctgcactgactcttccctggct 265
||||||||| ||||||||| || |||||||||| |||||||||||||
Sbjct: 157 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 65.9 bits (33), Expect = 2e-11
Identities = 50/55 (90%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 22 acagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 73
||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
>48975_osa-miR408:pmrd
Length = 213
Score = 67.9 bits (34), Expect = 4e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 18 ggagacagggatgaggcagagcatgggatgaggccatcaaca 59
|||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
Score = 54.0 bits (27), Expect = 6e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 227 tgttgttgcttacttccctgcactgactcttccctggctcccc 269
|||||||||| || |||||||||| |||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
>54690_tae-miR408:pmrd
Length = 187
Score = 56.0 bits (28), Expect = 2e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 18 ggagacagggatgaggcagagcatgggatgaggccatcaacaaaattt 65
||||||||||||| |||||||| |||||||||| | |||||||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
Score = 50.1 bits (25), Expect = 9e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 241 tccctgcactgactcttccctggctcccc 269
||||||||||| |||||||||||||||||
Sbjct: 133 tccctgcactgcctcttccctggctcccc 161
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 20 agacagggatgaggcagagcatgggatga 48
||||| |||||||||||||||||| ||||
Sbjct: 85 agacaaggatgaggcagagcatggaatga 57
>54389_rco-miR408:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 242 ccctgcactgactcttccctggct 265
|||||||||| |||||||||||||
Sbjct: 88 ccctgcactgcctcttccctggct 111
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 245 tgcactgactcttccctggctccc 268
||||||| ||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctccc 2
>47031_ath-miR408:pmrd
Length = 218
Score = 40.1 bits (20), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 245 tgcactgactcttccctggctccc 268
||||||| ||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
