miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48638_gra-miR172b:pmrd
Length = 240
Score = 149 bits (75), Expect = 1e-36
Identities = 155/182 (85%)
Strand = Plus / Plus
Query: 3 aatcctgatgatgctgcagtagagancagtggcattggtgtaacactgacctgaccatgc 62
|||| ||||||||||||| | | | |||||||||| ||||| |||||||||||| |||
Sbjct: 3 aatcttgatgatgctgcatgaaaaaacagtggcattagtgtagtactgacctgaccgtgc 62
Query: 63 gtttgccatgcccaatcggggagaccttgcggaggacctaattcaactcgattcaccatt 122
||||||| | |||||| |||| || ||| |||||| | |||||||| | |||||||||
Sbjct: 63 atttgccacggccaatcagggacacgttgtggaggatcgaattcaaccggtttcaccatt 122
Query: 123 gctctttcctcgctaggaaagaatctaggatatccactattccaaaaaataggctgatct 182
| ||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct: 123 gttctttcctcactaggaaaaaatctcggatatgcactattccaaaaaataggctgatct 182
Query: 183 ga 184
||
Sbjct: 183 ga 184
>48637_gra-miR172a:pmrd
Length = 148
Score = 121 bits (61), Expect = 3e-28
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcagtagagancagtggcattggtgtaacactgacctgaccat 60
|||||| ||||||||||||| ||||| |||||||||| ||||| |||||||||||| |
Sbjct: 1 agaatcttgatgatgctgcatgagagaacagtggcattagtgtagtactgacctgaccgt 60
Query: 61 gcgtttgccatgcccaatcggggagaccttgcggaggacctaattcaactcgattcacca 120
|| ||||||| | |||||| |||| || ||| |||||| | |||||||| | |||||||
Sbjct: 61 gcatttgccacggccaatcagggacacgttgtggaggatcgaattcaaccggtttcacca 120
Query: 121 ttgctctttcctcgctaggaaagaatct 148
||| ||||||||| ||||||||||||||
Sbjct: 121 ttgttctttcctcactaggaaagaatct 148
>55046_zma-miR172m:pmrd
Length = 455
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcagt 22
||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagt 22
>54684_tae-miR172b:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>54683_tae-miR172a:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>54641_sof-miR172a:pmrd
Length = 300
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 280 agaatcctgatgatgctgcag 300
>48913_osa-miR172p:pmrd
Length = 318
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 298 agaatcctgatgatgctgcag 318
>48912_osa-miR172o:pmrd
Length = 53
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>48911_osa-miR172n:pmrd
Length = 62
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 42 agaatcctgatgatgctgcag 62
>48910_osa-miR172m:pmrd
Length = 297
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 277 agaatcctgatgatgctgcag 297
>48667_hvv-miR172d:pmrd
Length = 272
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 252 agaatcctgatgatgctgcag 272
>48666_hvv-miR172c:pmrd
Length = 137
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 101 agaatcctgatgatgctgcag 121
>48665_hvv-miR172b:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 70 agaatcctgatgatgctgcag 90
>48664_hvv-miR172a:pmrd
Length = 255
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 235 agaatcctgatgatgctgcag 255
>48314_bdi-miR172d:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 72 agaatcctgatgatgctgcag 92
>46989_ath-miR172m:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgcag 21
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>55047_zma-miR172n:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgca 20
||||||||||||||||||||
Sbjct: 61 agaatcctgatgatgctgca 80
>51706_ptc-miR172i:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgca 20
||||||||||||||||||||
Sbjct: 97 agaatcctgatgatgctgca 116
>51549_psi-miR172:pmrd
Length = 68
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgca 20
||||||||||||||||||||
Sbjct: 48 agaatcctgatgatgctgca 67
>51337_pga-miR172:pmrd
Length = 248
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 agaatcctgatgatgctgca 20
||||||||||||||||||||
Sbjct: 228 agaatcctgatgatgctgca 247
