miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46908_ata-miR1120:pmrd
Length = 85
Score = 95.6 bits (48), Expect = 6e-21
Identities = 51/52 (98%)
Strand = Plus / Plus
Query: 39 taattttgtactacagttagtacaaagttgagtcatctattttagaacggag 90
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 34 taattttgtactatagttagtacaaagttgagtcatctattttagaacggag 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 55 ttagtacaaagttgagtcatctattttagaacggag 90
||||||||||||||||||||||||||| ||||||||
Sbjct: 36 ttagtacaaagttgagtcatctattttggaacggag 1
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 17 ctccgttctaaaatagatgatttaattttgtacta 51
|||||||||||||||||||| | || |||||||||
Sbjct: 85 ctccgttctaaaatagatgactcaactttgtacta 51
>54712_tae-miR1137:pmrd
Length = 148
Score = 87.7 bits (44), Expect = 1e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 17 ctccgttctaaaatagatgatttaattttgtactacagttagtacaaagttgagtcatct 76
|||||||| ||||| ||||| || ||||||||| ||||||||||||||||||||||||
Sbjct: 34 ctccgttccaaaatggatgacccaagtttgtactaaagttagtacaaagttgagtcatct 93
Query: 77 attttagaacggagggagta 96
||| | ||||||||||||||
Sbjct: 94 attctggaacggagggagta 113
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 17 ctccgttctaaaatagatgatttaattttgtactacagttagtacaaagttgagtcatct 76
|||||||| | ||||||||| | || ||||||||| |||||||||| ||| ||||||
Sbjct: 107 ctccgttccagaatagatgactcaactttgtactaactttagtacaaacttgggtcatcc 48
Query: 77 attttagaacggagggagta 96
||||| ||||||||||||||
Sbjct: 47 attttggaacggagggagta 28
>48648_hpr-miR1120:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 55 ttagtacaaagttgagtcatctattttagaacggagggagtat 97
|||||| |||||||||||| |||||| | |||||||||||||
Sbjct: 39 ttagtataaagttgagtcacttattttgggacggagggagtat 81
>50920_osa-miRf11705-akr:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 76 tattttagaacggagggagta 96
|||||||||||||||||||||
Sbjct: 32 tattttagaacggagggagta 12
