miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54711_tae-miR1136:pmrd
Length = 107
Score = 157 bits (79), Expect = 3e-39
Identities = 100/107 (93%)
Strand = Plus / Plus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
Query: 80 ctatatacattcatttctgcgacaattaatttggaacggaaggagta 126
||| |||||| |||||||||||| | ||||||| |||||| ||||||
Sbjct: 61 ctaaatacatccatttctgcgacgagtaatttgaaacggagggagta 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
||||||||||||||| ||||||| ||||||| |||||||||| |||| || || |
Sbjct: 107 tactccctccgtttcaaattactcgtcgcagaaatggatgtatttagaactaaaatacat 48
Query: 80 ctatatacattcatttctgcgacaattaatttggaacggaaggagta 126
||| |||||| ||| ||||||||| ||||| |||||||| ||||||
Sbjct: 47 ctagatacatccatacctgcgacaagtaattcggaacggagggagta 1
>54710_tae-miR1135:pmrd
Length = 109
Score = 85.7 bits (43), Expect = 8e-18
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
||||||||||||| |||||||||||||||| || |||||||||||| |||||||||||
Sbjct: 108 tactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagtt 49
Query: 80 ctatatacattcatttctgcgacaattaatt 110
||| |||||| ||| || | ||||| |||||
Sbjct: 48 ctagatacatccatatccgagacaagtaatt 18
Score = 54.0 bits (27), Expect = 3e-08
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
|||||||||| || |||||||||||| | | |||||||||||||||| || || |
Sbjct: 2 tactccctccattcggaattacttgtctcggatatggatgtatctagaactaaaatacgt 61
Query: 80 ctatatacattcatttctgcgacaattaatttggaacggaaggagta 126
||| |||||| ||||||||||||| ||||| ||||||| ||||||
Sbjct: 62 ctagatacatctatttctgcgacaagtaattccgaacggagggagta 108
>46909_ata-miR1122:pmrd
Length = 170
Score = 63.9 bits (32), Expect = 3e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 36 aattacttgtcgcaggtatggatgtatctagatgtattttagttctatatacattcattt 95
||||| |||||| || ||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 42 aattatttgtcggagaaatggatgtatctagacgtattttagttctagatacatccattt 101
>54703_tae-miR1128:pmrd
Length = 188
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 55 ggatgtatctagatgtattttagttctatatacat 89
|||||||||||||||||||||||||||| ||||||
Sbjct: 115 ggatgtatctagatgtattttagttctagatacat 81
