miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54711_tae-miR1136:pmrd
Length = 107
Score = 155 bits (78), Expect = 1e-38
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 cctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagttctaaa 65
Query: 85 tacatccatttctgtgacgagtaatttggaacgg 118
|||||||||||||| ||||||||||||| |||||
Sbjct: 66 tacatccatttctgcgacgagtaatttgaaacgg 99
>54710_tae-miR1135:pmrd
Length = 109
Score = 91.7 bits (46), Expect = 1e-19
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| ||| ||||||||||||||||| || |||||||||||| |||||||||||||| |
Sbjct: 103 cctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagttctaga 44
Query: 85 tacatccatttctgtgacgagtaatt 110
||||||||| || | ||| |||||||
Sbjct: 43 tacatccatatccgagacaagtaatt 18
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctaga 67
||||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 7 cctccattcggaattacttgtctcggatatggatgtatctaga 49
>46909_ata-miR1122:pmrd
Length = 170
Score = 79.8 bits (40), Expect = 5e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 36 aattacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatccattt 95
||||| |||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 42 aattatttgtcggagaaatggatgtatctagacgtattttagttctagatacatccattt 101
>54703_tae-miR1128:pmrd
Length = 188
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 55 ggatgtatctagatgtattttagttctaaatacatcc 91
|||||||||||||||||||||||||||| ||||||||
Sbjct: 115 ggatgtatctagatgtattttagttctagatacatcc 79
>54702_tae-miR1127:pmrd
Length = 150
Score = 46.1 bits (23), Expect = 7e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 57 atgtatctagatgtattttagttctaaatacatccattt 95
||||||||| ||| ||||||||| || ||||||||||||
Sbjct: 56 atgtatctaaatgcattttagttgtagatacatccattt 94
