miRNEST 2.0, an integrative microRNA resource :: BLAST
>51603_ptc-miR159b:pmrd
Length = 187
Score = 73.8 bits (37), Expect = 4e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 114 ggcttgcatatttcaggagctttattaccttttagtttgatctttatttggattgaaggg 173
||||||||||| |||||||||||||||||| | ||| ||||||| ||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagctttattacctaat-gttagatctttttttggattgaaggg 171
Query: 174 agctc 178
|||||
Sbjct: 172 agctc 176
Score = 40.1 bits (20), Expect = 6e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 43 tgctgggtagatcaagctgctggactatggatccca 78
||||||||||||| |||||||| ||||| ||||||
Sbjct: 41 tgctgggtagatcgagctgctgagctatgaatccca 76
>54540_sly-miR159:pmrd
Length = 177
Score = 58.0 bits (29), Expect = 3e-09
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 117 ttgcatatttcaggagctttatt--accttttagtttgatctttatttggattgaaggga 174
|||||||| |||||||||||||| ||| ||| |||||||| || |||||||||||||||
Sbjct: 113 ttgcatatgtcaggagctttattttacccttt-gtttgatcattttttggattgaaggga 171
Query: 175 gctc 178
||||
Sbjct: 172 gctc 175
>48699_mtr-miR159a:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 144 tttagtttgatctttatttggattgaagggagctc 178
|||||||| |||||| |||||||||||||||||||
Sbjct: 132 tttagtttaatctttctttggattgaagggagctc 166
>51602_ptc-miR159a:pmrd
Length = 183
Score = 52.0 bits (26), Expect = 2e-07
Identities = 118/145 (81%), Gaps = 4/145 (2%)
Strand = Plus / Plus
Query: 34 agaggatcttgctgggtagatcaagctgctggactatggatcccaaaagtcctatcctct 93
||||| ||||||||||||||| |||||||| |||||||||| | |||||||| || |
Sbjct: 32 agaggttcttgctgggtagattaagctgctaagctatggatcc--acagtcctat-ctat 88
Query: 94 aattttaagggtaggcttatggcttgcatatttcaggagctttattaccttttagtttga 153
| | |||| |||| || ||||||||||| |||||||||||||| ||| | ||| ||
Sbjct: 89 caactgaaggataggtttgcggcttgcatatctcaggagctttattgcctaat-gttaga 147
Query: 154 tctttatttggattgaagggagctc 178
|| | |||||||||||||||||||
Sbjct: 148 tccctttttggattgaagggagctc 172
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 50.1 bits (25), Expect = 6e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 114 ggcttgcatatttcaggagctttattaccttttagtttgatctttatttggattgaaggg 173
||||||||||| |||||||||||||| ||| | ||| |||| | ||||||||||||||
Sbjct: 104 ggcttgcatatctcaggagctttattgcctaat-gttagatccctttttggattgaaggg 162
Query: 174 agctc 178
|||||
Sbjct: 163 agctc 167
Score = 46.1 bits (23), Expect = 1e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 34 agaggatcttgctgggtagatcaagctgctggactatggatcc 76
||||| ||||||||||||||| |||||||| ||||||||||
Sbjct: 27 agaggttcttgctgggtagattaagctgctaagctatggatcc 69
>51604_ptc-miR159c:pmrd
Length = 183
Score = 50.1 bits (25), Expect = 6e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 114 ggcttgcatatttcaggagctttattaccttttagtttgatctttatttggattgaaggg 173
||||||||||| |||||||||||||| ||| | ||| |||| | ||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagctttattgcctaat-gttagatccctttttggattgaaggg 167
Query: 174 agctc 178
|||||
Sbjct: 168 agctc 172
Score = 46.1 bits (23), Expect = 1e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 34 agaggatcttgctgggtagatcaagctgctggactatggatcc 76
||||| ||||||||||||||| |||||||| ||||||||||
Sbjct: 32 agaggttcttgctgggtagattaagctgctaagctatggatcc 74
>54777_vvi-miR159c:pmrd
Length = 190
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 taggcttatggcttgcatatttcaggagct 134
||||||| |||||||||||| |||||||||
Sbjct: 106 taggcttgtggcttgcatatctcaggagct 135
>48821_osa-miR159c:pmrd
Length = 197
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 ttggattgaagggagctccaca 182
||||||||||||||||||||||
Sbjct: 168 ttggattgaagggagctccaca 189
>51562_pta-miR319:pmrd
Length = 206
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 161 ttggattgaagggagctccac 181
|||||||||||||||||||||
Sbjct: 26 ttggattgaagggagctccac 6
>51553_pta-miR159a:pmrd
Length = 210
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 ttggattgaagggagctccac 181
|||||||||||||||||||||
Sbjct: 185 ttggattgaagggagctccac 205
>48819_osa-miR159a:pmrd
Length = 272
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 gttgagctcctttctgtccaaaaag 35
|||||||||||||| ||||||||||
Sbjct: 10 gttgagctcctttcggtccaaaaag 34
>48796_oru-miR159:pmrd
Length = 274
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 gttgagctcctttctgtccaaaaag 35
|||||||||||||| ||||||||||
Sbjct: 10 gttgagctcctttcggtccaaaaag 34
>51547_psi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 ttggattgaagggagctcca 180
||||||||||||||||||||
Sbjct: 174 ttggattgaagggagctcca 193
>48825_osa-miR159m:pmrd
Length = 249
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 ttgagctcctttctgtccaaaaag 35
||||||||||||| ||||||||||
Sbjct: 1 ttgagctcctttcggtccaaaaag 24
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctccacac 183
||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctacac 24
>48539_gma-miR159a:pmrd
Length = 214
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctccacac 183
||||||||||||||||||| ||||
Sbjct: 175 tttggattgaagggagctctacac 198
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcc 179
||||||||||||||||||||
Sbjct: 195 tttggattgaagggagctcc 214
