miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54702_tae-miR1127:pmrd
Length = 150
Score = 260 bits (131), Expect = 2e-70
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 1 ttagaatatactccctccgttcggaattacttgtcacaaaaatgataaaaatggatgtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttagaatatactccctccgttcggaattacttgtcacaaaaatgataaaaatggatgtat 83
Query: 61 ctacaactaaaatgcatttagatacatttatttcttggacgagtaattccgaacggaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 ctacaactaaaatgcatttagatacatttatttcttggacgagtaattccgaacggaagg 23
Query: 121 agtagttgagt 131
|||||||||||
Sbjct: 22 agtagttgagt 12
>54710_tae-miR1135:pmrd
Length = 109
Score = 77.8 bits (39), Expect = 2e-15
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 51 atggatgtatctacaactaaaatgcatttagatacatttatttcttggacgagtaattcc 110
||||||||||||| ||||||||| | | ||||||||| ||||||| ||| |||||||||
Sbjct: 35 atggatgtatctagaactaaaatacgtctagatacatctatttctgcgacaagtaattcc 94
Query: 111 gaacggaaggagtag 125
||||||| |||||||
Sbjct: 95 gaacggagggagtag 109
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||||||||||||||||
Sbjct: 108 tactccctccgttcggaattacttgtc 82
>46909_ata-miR1122:pmrd
Length = 170
Score = 75.8 bits (38), Expect = 7e-15
Identities = 99/118 (83%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 8 atactccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaa 66
||||||||||||| ||||| ||||||| || ||||| ||||||||||||||||||| ||
Sbjct: 143 atactccctccgtccggaactacttgttgcagaaatggataaaaatggatgtatctagaa 84
Query: 67 ctaaaatgcatttagatacatttatttcttggacgagtaattccgaacggaaggagta 124
||||||| | | ||||||||| |||||| ||| | ||||| || ||||| ||||||
Sbjct: 83 ctaaaatacgtctagatacatccatttctccgacaaataatttcggacggagggagta 26
>54703_tae-miR1128:pmrd
Length = 188
Score = 63.9 bits (32), Expect = 3e-11
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatga-taaaaatggatgtatctacaac 67
|||||||||||| || || ||||||||| ||||||| ||||| ||||||||||| |||
Sbjct: 34 tactccctccgtccgaaaatacttgtcatcaaaatgaataaaaggggatgtatctagaac 93
Query: 68 taaaatgcatttagatacat 87
|||||| ||| |||||||||
Sbjct: 94 taaaatacatctagatacat 113
>54711_tae-miR1136:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 49 aaatggatgtatctacaactaaaatgcatttagatacatttatttcttggacgagtaatt 108
|||||||||||| || ||||||||| ||| ||||||||| || || ||| |||||||
Sbjct: 76 aaatggatgtatttagaactaaaatacatctagatacatccatacctgcgacaagtaatt 17
Query: 109 ccgaacggaaggagta 124
| ||||||| ||||||
Sbjct: 16 cggaacggagggagta 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||| ||||||||||||
Sbjct: 1 tactccctccgttccgaattacttgtc 27
>48322_bdi-miR1135:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 actccctccgttcggaattacttgtc 35
|||||||||| |||||||||||||||
Sbjct: 130 actccctccggtcggaattacttgtc 105
