miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54710_tae-miR1135:pmrd
Length = 109
Score = 165 bits (83), Expect = 9e-42
Identities = 101/107 (94%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtagaaatggatgtatctagatgtatgttagtt 68
|||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||
Sbjct: 108 tactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagtt 49
Query: 69 ctagatacatccatatccgagacaagtaattcggaatagagggagta 115
|||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 48 ctagatacatccatatccgagacaagtaattccgaatggagggagta 2
Score = 61.9 bits (31), Expect = 1e-10
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtagaaatggatgtatctagatgtatgttagtt 68
|||||||||| |||||||||||||||| || ||||||||||||||| || || |
Sbjct: 2 tactccctccattcggaattacttgtctcggatatggatgtatctagaactaaaatacgt 61
Query: 69 ctagatacatccatatccgagacaagtaattcggaatagagggagta 115
||||||||||| || || | |||||||||||| ||| |||||||||
Sbjct: 62 ctagatacatctatttctgcgacaagtaattccgaacggagggagta 108
>54711_tae-miR1136:pmrd
Length = 107
Score = 101 bits (51), Expect = 1e-22
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtagaaatggatgtatctagatgtatgttagtt 68
|||||||||||||| ||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
Query: 69 ctagatacatccatatccgagacaagtaatt 99
||| |||||||||| || | ||| |||||||
Sbjct: 61 ctaaatacatccatttctgcgacgagtaatt 91
Score = 69.9 bits (35), Expect = 4e-13
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtagaaatggatgtatctagatgtatgttagtt 68
||||||||||||| ||||||| |||| |||||||||||||| |||| || || |
Sbjct: 107 tactccctccgtttcaaattactcgtcgcagaaatggatgtatttagaactaaaatacat 48
Query: 69 ctagatacatccatatccgagacaagtaattcggaatagagggagta 115
||||||||||||||| | | |||||||||||||||| |||||||||
Sbjct: 47 ctagatacatccatacctgcgacaagtaattcggaacggagggagta 1
>46909_ata-miR1122:pmrd
Length = 170
Score = 99.6 bits (50), Expect = 5e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtagaaatggatgtatctagatgtatgttagtt 68
|||||||||||| || ||||| |||||| ||||||||||||||||||| |||| ||||||
Sbjct: 26 tactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttagtt 85
Query: 69 ctagatacatccat 82
||||||||||||||
Sbjct: 86 ctagatacatccat 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtagaaatggat 47
|||||||||||| ||||| ||||||| | ||||||||||
Sbjct: 142 tactccctccgtccggaactacttgttgcagaaatggat 104
>54702_tae-miR1127:pmrd
Length = 150
Score = 67.9 bits (34), Expect = 2e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtagaaatggatgtatctagatgtatgttagtt 68
|||||| |||||||||||||||| ||| |||||| ||||||||| ||| || ||||||
Sbjct: 19 tactccttccgttcggaattactcgtccaagaaataaatgtatctaaatgcattttagtt 78
Query: 69 ctagatacatccat 82
|||||||||||||
Sbjct: 79 gtagatacatccat 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||||||||||||||||
Sbjct: 134 tactccctccgttcggaattacttgtc 108
>54703_tae-miR1128:pmrd
Length = 188
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 44 ggatgtatctagatgtatgttagttctagatacatcc 80
|||||||||||||||||| ||||||||||||||||||
Sbjct: 115 ggatgtatctagatgtattttagttctagatacatcc 79
>48322_bdi-miR1135:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 10 actccctccgttcggaattacttgtcg 36
|||||||||| ||||||||||||||||
Sbjct: 130 actccctccggtcggaattacttgtcg 104
