miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54387_rco-miR162:pmrd
          Length = 96

 Score = 85.7 bits (43), Expect = 7e-18
 Identities = 85/95 (89%), Gaps = 3/95 (3%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctggaggcagcggttcatcgatctcttcctggagattttttgttctg-aactgcaat-aa 77
           ||||||||||||||||||||||||||||||||| |  ||||||| || |||   ||| ||
Sbjct: 3   ctggaggcagcggttcatcgatctcttcctgga-agattttgttgtgaaacaaaaataaa 61

                                              
Query: 78  acacatgaatcgatcgataaacctctgcatccagc 112
           || ||||||||||||||||||||||||||||||||
Sbjct: 62  acgcatgaatcgatcgataaacctctgcatccagc 96




>48493_ghr-miR162a:pmrd
          Length = 148

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 85/96 (88%), Gaps = 3/96 (3%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctggaggcagcggttcatcgatctcttcctggagattttttgttctga-actgcaataaa 78
           ||||||||||||||||||||||||||||||| ||| |||| ||| ||| | |   | |||
Sbjct: 24  ctggaggcagcggttcatcgatctcttcctg-agaatttt-gttgtgagaataacacaaa 81

                                               
Query: 79  cacatgaatcgatcgataaacctctgcatccagcgc 114
            |||||||||||||||||||||||||||||||||||
Sbjct: 82  tacatgaatcgatcgataaacctctgcatccagcgc 117




>52400_ptc-miRf10578-akr:pmrd
          Length = 103

 Score = 75.8 bits (38), Expect = 7e-15
 Identities = 84/98 (85%), Gaps = 6/98 (6%)
 Strand = Plus / Minus

                                                                       
Query: 20  ctggaggcagcggttcatcgatctcttcctggaga-ttttttgttctgaactgcaataaa 78
           ||||||||||||||||||||||||||||||||  | |||||||||  | ||      |||
Sbjct: 95  ctggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacg-----aaa 41

                                                 
Query: 79  cacatgaatcgatcgataaacctctgcatccagcgctt 116
            ||||||| |||||||||||||||||||||||||||||
Sbjct: 40  aacatgaaccgatcgataaacctctgcatccagcgctt 3




>52399_ptc-miRf10577-akr:pmrd
          Length = 103

 Score = 75.8 bits (38), Expect = 7e-15
 Identities = 84/98 (85%), Gaps = 6/98 (6%)
 Strand = Plus / Minus

                                                                       
Query: 20  ctggaggcagcggttcatcgatctcttcctggaga-ttttttgttctgaactgcaataaa 78
           ||||||||||||||||||||||||||||||||  | |||||||||  | ||      |||
Sbjct: 95  ctggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacg-----aaa 41

                                                 
Query: 79  cacatgaatcgatcgataaacctctgcatccagcgctt 116
            ||||||| |||||||||||||||||||||||||||||
Sbjct: 40  aacatgaaccgatcgataaacctctgcatccagcgctt 3




>51616_ptc-miR162a:pmrd
          Length = 107

 Score = 75.8 bits (38), Expect = 7e-15
 Identities = 84/98 (85%), Gaps = 6/98 (6%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctggaggcagcggttcatcgatctcttcctggaga-ttttttgttctgaactgcaataaa 78
           ||||||||||||||||||||||||||||||||  | |||||||||  | ||      |||
Sbjct: 11  ctggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacg-----aaa 65

                                                 
Query: 79  cacatgaatcgatcgataaacctctgcatccagcgctt 116
            ||||||| |||||||||||||||||||||||||||||
Sbjct: 66  aacatgaaccgatcgataaacctctgcatccagcgctt 103




>46937_ath-miR162a:pmrd
          Length = 140

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 15 agtcgctggaggcagcggttcatcgatctcttcctg 50
          ||||||||||||||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 81  catgaatcgatcgataaacctctgcatccagcg 113
           ||||||| |||||||||||||||||||||||||
Sbjct: 79  catgaatagatcgataaacctctgcatccagcg 111




>48545_gma-miR162a:pmrd
          Length = 102

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 81  catgaatcgatcgataaacctctgcatccagcgct 115
           |||||||||||||||||||||||||||||||||||
Sbjct: 63  catgaatcgatcgataaacctctgcatccagcgct 97



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 11 gtgaagtcgctggaggcagcggttcatcgatctcttcctg 50
          |||||||| ||||| |||||||||||||||||||||||||
Sbjct: 1  gtgaagtcactggatgcagcggttcatcgatctcttcctg 40




>48423_cpa-miR162a:pmrd
          Length = 109

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 14 aagtcgctggaggcagcggttcatcgatctcttcctgg 51
          ||||| ||||||||||||||||||||||||||||||||
Sbjct: 7  aagtcactggaggcagcggttcatcgatctcttcctgg 44



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 80  acatgaatcgatcgataaacctctgcatccagcg 113
           ||||||||||||||||||||||||||||||||||
Sbjct: 69  acatgaatcgatcgataaacctctgcatccagcg 102




>52498_ptc-miRf10676-akr:pmrd
          Length = 101

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                   
Query: 20 ctggaggcagcggttcatcgatctcttcctggagatttttt 60
          |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctgaagatttttt 54




>52497_ptc-miRf10675-akr:pmrd
          Length = 105

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                   
Query: 20 ctggaggcagcggttcatcgatctcttcctggagatttttt 60
          |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctgaagatttttt 56




>52244_ptc-miRf10422-akr:pmrd
          Length = 105

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                   
Query: 20 ctggaggcagcggttcatcgatctcttcctggagatttttt 60
          |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctgaagatttttt 56




>52243_ptc-miRf10421-akr:pmrd
          Length = 101

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                   
Query: 20 ctggaggcagcggttcatcgatctcttcctggagatttttt 60
          |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctgaagatttttt 54




>51618_ptc-miR162c:pmrd
          Length = 107

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 20 ctggaggcagcggttcatcgatctcttcctggagatttttt 60
          |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctgaagatttttt 51




>51617_ptc-miR162b:pmrd
          Length = 107

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 20 ctggaggcagcggttcatcgatctcttcctggagatttttt 60
          |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctgaagatttttt 51




>47354_ath-miRf10254-akr:pmrd
          Length = 115

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 84  gaatcgatcgataaacctctgcatccagcgct 115
           ||||||||||||||||||||||||||||||||
Sbjct: 42  gaatcgatcgataaacctctgcatccagcgct 11



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 11  gtgaagtcgctggaggcagcggttcatcgatc 42
           ||||||||||||||||||||||||||||||||
Sbjct: 111 gtgaagtcgctggaggcagcggttcatcgatc 80




>46938_ath-miR162b:pmrd
          Length = 111

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 11 gtgaagtcgctggaggcagcggttcatcgatc 42
          ||||||||||||||||||||||||||||||||
Sbjct: 3  gtgaagtcgctggaggcagcggttcatcgatc 34



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 84  gaatcgatcgataaacctctgcatccagcgct 115
           ||||||||||||||||||||||||||||||||
Sbjct: 72  gaatcgatcgataaacctctgcatccagcgct 103




>54784_vvi-miR162:pmrd
          Length = 103

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                 
Query: 12 tgaagtcgctggaggcagcggttcatcgatctcttcctg 50
          ||||||| ||||| |||||||||||||||||||||||||
Sbjct: 1  tgaagtcactggatgcagcggttcatcgatctcttcctg 39



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 84  gaatcgatcgataaacctctgcatccagcg 113
           |||||| |||||||||||||||||||||||
Sbjct: 66  gaatcggtcgataaacctctgcatccagcg 95




>48682_llu-miR162:pmrd
          Length = 80

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 81  catgaatcgatcgataaacctctgcatccag 111
           |||||||||||||||||||||||||||||||
Sbjct: 50  catgaatcgatcgataaacctctgcatccag 80



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 20 ctggaggcagcggttcatcgatctcttcctg 50
          ||||| ||||||||| |||||||||||||||
Sbjct: 1  ctggaagcagcggtttatcgatctcttcctg 31




>48834_osa-miR162a:pmrd
          Length = 171

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 84  gaatcgatcgataaacctctgcatccag 111
           ||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163




>48707_mtr-miR162d:pmrd
          Length = 87

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 80  acatgaatcgatcgataaacctctgcatccag 111
           |||||||||| |||||||||||||||||||||
Sbjct: 56  acatgaatcggtcgataaacctctgcatccag 87



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 20 ctggaggcagcggttcatcgatctcttcctg 50
          ||||| |||||||||||||||||| ||||||
Sbjct: 1  ctggatgcagcggttcatcgatctgttcctg 31




>48706_mtr-miR162c:pmrd
          Length = 86

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 80  acatgaatcgatcgataaacctctgcatcca 110
           |||||||||| ||||||||||||||||||||
Sbjct: 31  acatgaatcggtcgataaacctctgcatcca 1



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                         
Query: 20 ctggaggcagcggttcatcgatctcttcctg 50
          ||||| |||||||||||||||||| ||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctg 56




>48705_mtr-miR162b:pmrd
          Length = 85

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 80  acatgaatcgatcgataaacctctgcatcca 110
           |||||||||| ||||||||||||||||||||
Sbjct: 55  acatgaatcggtcgataaacctctgcatcca 85



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 21 tggaggcagcggttcatcgatctcttcctg 50
          |||| |||||||||||||||||| ||||||
Sbjct: 1  tggatgcagcggttcatcgatctgttcctg 30




>48685_lsa-miR162:pmrd
          Length = 89

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 91  tcgataaacctctgcatccagcgct 115
           |||||||||||||||||||||||||
Sbjct: 1   tcgataaacctctgcatccagcgct 25




>48546_gma-miR162m:pmrd
          Length = 367

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 91  tcgataaacctctgcatccagcgct 115
           |||||||||||||||||||||||||
Sbjct: 1   tcgataaacctctgcatccagcgct 25




>54948_zma-miR162b:pmrd
          Length = 130

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  gaatcgatcgataaacctctgcatccag 111
           |||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130




>54542_sly-miR162:pmrd
          Length = 99

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  gaatcgatcgataaacctctgcatccag 111
           |||||| |||||||||||||||||||||
Sbjct: 72  gaatcggtcgataaacctctgcatccag 99




>48836_osa-miR162m:pmrd
          Length = 114

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  gaatcgatcgataaacctctgcatccag 111
           |||||||||||||| |||||||||||||
Sbjct: 87  gaatcgatcgataagcctctgcatccag 114




>48835_osa-miR162b:pmrd
          Length = 134

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  gaatcgatcgataaacctctgcatccag 111
           |||||||||||||| |||||||||||||
Sbjct: 97  gaatcgatcgataagcctctgcatccag 124




>48690_mdo-miR162:pmrd
          Length = 88

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 81  catgaatcgatcgataaacctctgcatccag 111
           ||||||||| ||||||||||| |||||||||
Sbjct: 58  catgaatcggtcgataaacctttgcatccag 88



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 20 ctggaggcagcggttcatcgatct 43
          ||||||||| ||||||||||||||
Sbjct: 1  ctggaggcatcggttcatcgatct 24