miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54697_tae-miR1122:pmrd
Length = 295
Score = 89.7 bits (45), Expect = 5e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttgggaagaagg 115
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||
Sbjct: 87 ttttagtattagatacatccgtatctagactaatctaagacaagaattttgggacggagg 146
Query: 116 gagta 120
|||||
Sbjct: 147 gagta 151
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 11 atactccctccgtccaaaaatacatgtcttagat 44
||||||||||||||| ||||| | ||||||||||
Sbjct: 152 atactccctccgtcccaaaattcttgtcttagat 119
>54757_tmo-miR1122:pmrd
Length = 180
Score = 60.0 bits (30), Expect = 4e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttggga 109
||||||| |||||||||||| ||||| || ||| |||||||||||||||||||
Sbjct: 88 ttttagtgttagatacatccgtatctaaacaaatgtaagacaagaattttggga 141
>48647_hpi-miR1122:pmrd
Length = 180
Score = 56.0 bits (28), Expect = 7e-09
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 65 tagatacatcccaatctagacgaatctaagacaagaattttgggaagaagggagta 120
||||||||||| || ||||| |||||| |||||||||||||||| | ||||||||
Sbjct: 83 tagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagta 28
Score = 52.0 bits (26), Expect = 1e-07
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttgggaagaagg 115
||||||| ||||| |||| | ||||| || |||||||||| |||||||||||| | |||
Sbjct: 90 ttttagtgttagacacattcatatctaaacaaatctaagacnagaattttgggacggagg 149
Query: 116 gagta 120
|||||
Sbjct: 150 gagta 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 9 aaatactccctccgtccaaaaatacatgtcttagat 44
||||||||||||||||| ||||| | |||||||||
Sbjct: 157 aaatactccctccgtcccaaaattctngtcttagat 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 9 aaatactccctccgtccaaaaatacatgtcttagat 44
||||||||||||||||| ||||| | |||| |||||
Sbjct: 25 aaatactccctccgtcccaaaattcttgtcatagat 60
>49637_osa-miRf10422-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgtccaaaaa 30
||||||||||||||||||||
Sbjct: 11 atactccctccgtccaaaaa 30
>49636_osa-miRf10421-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgtccaaaaa 30
||||||||||||||||||||
Sbjct: 11 atactccctccgtccaaaaa 30
