miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48487_ghb-miR169a:pmrd
Length = 189
Score = 65.9 bits (33), Expect = 4e-11
Identities = 43/45 (95%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 27 acatgaagataa-gagtcttgtttgctagccaaggatgacttgcc 70
|||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 24 acatgaagataaagagtcttgtttggtagccaaggatgacttgcc 68
>52726_ptc-miRf10904-akr:pmrd
Length = 132
Score = 58.0 bits (29), Expect = 9e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 38 agagtcttgtttgctagccaaggatgacttgcc 70
||||||||||||| |||||||||||||||||||
Sbjct: 1 agagtcttgtttggtagccaaggatgacttgcc 33
>53831_ptc-miRf12009-akr:pmrd
Length = 138
Score = 56.0 bits (28), Expect = 4e-08
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 28 catgaagataagagtcttgtttgctagccaaggatgacttgccc 71
|||||||||||||| |||||||| |||||||||| |||||||||
Sbjct: 1 catgaagataagag-cttgtttggtagccaaggacgacttgccc 43
>53746_ptc-miRf11924-akr:pmrd
Length = 138
Score = 56.0 bits (28), Expect = 4e-08
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 28 catgaagataagagtcttgtttgctagccaaggatgacttgccc 71
|||||||||||||| |||||||| |||||||||| |||||||||
Sbjct: 1 catgaagataagag-cttgtttggtagccaaggacgacttgccc 43
>54548_sly-miR169b:pmrd
Length = 205
Score = 54.0 bits (27), Expect = 1e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 28 catgaagataagagtcttgtttgctagccaaggatgacttgcc 70
||||| || ||||||||| |||| |||||||||||||||||||
Sbjct: 147 catgatgagaagagtcttatttggtagccaaggatgacttgcc 189
>51670_ptc-miR169m:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 tcttgtttgctagccaaggatgacttgcc 70
||||||||| |||||||||||||||||||
Sbjct: 1 tcttgtttggtagccaaggatgacttgcc 29
>51669_ptc-miR169l:pmrd
Length = 143
Score = 50.1 bits (25), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 tcttgtttgctagccaaggatgacttgcc 70
||||||||| |||||||||||||||||||
Sbjct: 1 tcttgtttgatagccaaggatgacttgcc 29
>51668_ptc-miR169k:pmrd
Length = 203
Score = 50.1 bits (25), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 tcttgtttgctagccaaggatgacttgcc 70
||||||||| |||||||||||||||||||
Sbjct: 1 tcttgtttggtagccaaggatgacttgcc 29
>51667_ptc-miR169j:pmrd
Length = 137
Score = 50.1 bits (25), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 tcttgtttgctagccaaggatgacttgcc 70
||||||||| |||||||||||||||||||
Sbjct: 1 tcttgtttgatagccaaggatgacttgcc 29
>51666_ptc-miR169i:pmrd
Length = 123
Score = 50.1 bits (25), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 tcttgtttgctagccaaggatgacttgcc 70
||||||||| |||||||||||||||||||
Sbjct: 1 tcttgtttggtagccaaggatgacttgcc 29
>51680_ptc-miR169w:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tgtttgctagccaaggatgacttgccc 71
|||||| ||||||||||||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgccc 29
>51679_ptc-miR169v:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tgtttgctagccaaggatgacttgccc 71
|||||| ||||||||||||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgccc 29
>54807_vvi-miR169e:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 41 gtcttgtttgctagccaaggatgacttgcc 70
||||||| || |||||||||||||||||||
Sbjct: 1 gtcttgtctgatagccaaggatgacttgcc 30
>48361_bna-miR169l:pmrd
Length = 199
Score = 44.1 bits (22), Expect = 1e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcc 70
||||||| ||||| |||||||||||||||||||
Sbjct: 10 aagagtcgtgtttagtagccaaggatgacttgcc 43
>46972_ath-miR169l:pmrd
Length = 211
Score = 44.1 bits (22), Expect = 1e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcc 70
||||||| ||||| |||||||||||||||||||
Sbjct: 29 aagagtcatgtttaatagccaaggatgacttgcc 62
>46971_ath-miR169k:pmrd
Length = 213
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 tttgctagccaaggatgacttgcccgcttc 76
|||| ||||||||||||||||||| |||||
Sbjct: 38 tttggtagccaaggatgacttgcctgcttc 67
>46970_ath-miR169j:pmrd
Length = 221
Score = 44.1 bits (22), Expect = 1e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 37 aagagtcttgtttgctagccaaggatgacttgcc 70
||||||| ||||| |||||||||||||||||||
Sbjct: 36 aagagtcatgtttagtagccaaggatgacttgcc 69
>51681_ptc-miR169x:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 5e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 tgtttgctagccaaggatgacttgc 69
||||| |||||||||||||||||||
Sbjct: 4 tgttttctagccaaggatgacttgc 28
>51675_ptc-miR169r:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 5e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 gtttgctagccaaggatgacttgcc 70
||||| |||||||||||||||||||
Sbjct: 5 gtttggtagccaaggatgacttgcc 29
>48358_bna-miR169i:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 5e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 38 agagtcttgtttgctagccaaggatgacttgcc 70
|||||| ||||| |||||||||||||||||||
Sbjct: 1 agagtcatgtttagtagccaaggatgacttgcc 33
>48356_bna-miR169g:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 5e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 595 ggcagtctccttggctactcagaca 619
||||||||||||||||| |||||||
Sbjct: 115 ggcagtctccttggctattcagaca 139
