miRNEST 2.0, an integrative microRNA resource :: BLAST
>54389_rco-miR408:pmrd
Length = 129
Score = 83.8 bits (42), Expect = 2e-17
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 7 aaaggctgggaacaggcagagcatggatgcagctattaacagaaactctctgttttggct 66
|||| |||||||||||||| ||||||||| |||| ||||||||| ||||||||||||
Sbjct: 24 aaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggct 83
Query: 67 tcactcatgcactgcctcttccctggcttc 96
|| | |||||||||||||||||||||||
Sbjct: 84 ctacccctgcactgcctcttccctggcttc 113
>51762_ptc-miR408:pmrd
Length = 105
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 73
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 18 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 76
Query: 74 tgcactgcctcttccctggctt 95
||||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggctt 98
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 75.8 bits (38), Expect = 5e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 73
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 3 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 61
Query: 74 tgcactgcctcttccctg 91
||||||||||||||||||
Sbjct: 62 tgcactgcctcttccctg 79
>48428_cpt-miR408:pmrd
Length = 100
Score = 75.8 bits (38), Expect = 5e-15
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 73
|||||||||||||||||||||| | | |||||||| |||||||||||||| | | ||
Sbjct: 13 gggaacaggcagagcatggatggaaccattaacaggt--tctctgttttggctcctccca 70
Query: 74 tgcactgcctcttccctggct 94
|||||||||||||||||||||
Sbjct: 71 tgcactgcctcttccctggct 91
>51397_ppt-miR408b:pmrd
Length = 144
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 70 ctcatgcactgcctcttccctggcttc 96
|||||||||||||||||||||||||||
Sbjct: 90 ctcatgcactgcctcttccctggcttc 116
>51347_ppe-miR408:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 56 ctgttttggcttcactcatgcactgcctcttccctggct 94
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 58 ctgttgtggctctactcatgcactgcctcttccctggct 96
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 54 ctctgttttggcttcactcatgcactgcctcttccctggct 94
|||||||||| || || |||||||||||||||||||||||
Sbjct: 45 ctctgttttgtctctacccatgcactgcctcttccctggct 5
>47031_ath-miR408:pmrd
Length = 218
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 ctctgttttggcttcactcatgcactgcctcttccctggct 94
|||||||||| || || |||||||||||||||||||||||
Sbjct: 101 ctctgttttgtctctacccatgcactgcctcttccctggct 141
>54892_vvi-miR408:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 catgcactgcctcttccctggct 94
|||||||||||||||||||||||
Sbjct: 76 catgcactgcctcttccctggct 98
>48584_gma-miR408a:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 55 tctgttttggcttcactcatgcactgcctcttccctggc 93
|||||| ||||| | |||||||||||||| |||||||||
Sbjct: 82 tctgttgtggctacgctcatgcactgcctgttccctggc 120
Score = 42.1 bits (21), Expect = 8e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 11 gctgggaacaggcagagcatggatgcagctattaacagaaa 51
||||||||||||||| ||| | ||| |||||| ||||||||
Sbjct: 1 gctgggaacaggcagggcacgaatggagctatcaacagaaa 41
>46892_aqc-miR408:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 72 catgcactgcctcttccctggct 94
|||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggct 1
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 atgcactgcctcttccctggct 94
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 atgcactgcctcttccctggct 94
||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggct 85
>55104_zma-miR408:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tgcactgcctcttccctggct 94
|||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggct 173
>54690_tae-miR408:pmrd
Length = 187
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tgcactgcctcttccctggct 94
|||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggct 157
>54649_sof-miR408d:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tgcactgcctcttccctggct 94
|||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggct 197
>54648_sof-miR408c:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tgcactgcctcttccctggct 94
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>54647_sof-miR408b:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tgcactgcctcttccctggct 94
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>54646_sof-miR408a:pmrd
Length = 283
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tgcactgcctcttccctggct 94
|||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggct 265
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tgcactgcctcttccctggct 94
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>48975_osa-miR408:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tgcactgcctcttccctggct 94
|||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggct 174
>48317_bdi-miR408:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 catgcactgcctcttccctgg 92
|||||||||||||||||||||
Sbjct: 68 catgcactgcctcttccctgg 88
