miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54697_tae-miR1122:pmrd
Length = 295
Score = 270 bits (136), Expect = 2e-73
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1 ctaaatactccctccgtcccaaaaattttggcttagatttgtctaaatacgtatgtatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 ctaaatactccctccgtcccaaaaattttggcttagatttgtctaaatacgtatgtatca 79
Query: 61 agtcatgttttagtattagatacatccgtatctagactaatctaagacaagaattttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 agtcatgttttagtattagatacatccgtatctagactaatctaagacaagaattttggg 139
Query: 121 acggagggagtataag 136
||||||||||||||||
Sbjct: 140 acggagggagtataag 155
Score = 61.9 bits (31), Expect = 1e-10
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 79 gatacatccgtatctagactaatctaagacaagaattttgggacggagggagtat 133
||||||| ||||| ||||| |||||||| ||| | ||||||||||||||||||||
Sbjct: 78 gatacatacgtatttagacaaatctaagccaaaatttttgggacggagggagtat 24
Score = 61.9 bits (31), Expect = 1e-10
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 5 atactccctccgtcccaaaaattttggcttagatttgtctaaatacgtatgtatc 59
|||||||||||||||||||| | ||| |||||||| ||||| ||||| |||||||
Sbjct: 152 atactccctccgtcccaaaattcttgtcttagattagtctagatacggatgtatc 98
>48647_hpi-miR1122:pmrd
Length = 180
Score = 159 bits (80), Expect = 6e-40
Identities = 118/131 (90%)
Strand = Plus / Plus
Query: 3 aaatactccctccgtcccaaaaattttggcttagatttgtctaaatacgtatgtatcaag 62
|||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||| ||
Sbjct: 25 aaatactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctag 84
Query: 63 tcatgttttagtattagatacatccgtatctagactaatctaagacaagaattttgggac 122
|||||||||||| ||||| |||| | |||||| || |||||||||| |||||||||||||
Sbjct: 85 tcatgttttagtgttagacacattcatatctaaacaaatctaagacnagaattttgggac 144
Query: 123 ggagggagtat 133
|||||||||||
Sbjct: 145 ggagggagtat 155
Score = 89.7 bits (45), Expect = 5e-19
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagactaatctaagacaagaattttgggacggagggagtat 133
||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 83 tagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagtat 27
>54757_tmo-miR1122:pmrd
Length = 180
Score = 119 bits (60), Expect = 6e-28
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaaattttggcttagatttgtctaaatacgtatgtatcaagtca 65
||||||||||||||||||| | ||| |||| ||||||||||||| | |||||| ||| |
Sbjct: 26 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagtta 85
Query: 66 tgttttagtattagatacatccgtatctagactaatctaagacaagaattttgggacgga 125
||||||| ||||||||||||||||||| || ||| ||||||||||||||||||| |||
Sbjct: 86 cattttagtgttagatacatccgtatctaaacaaatgtaagacaagaattttgggatgga 145
Query: 126 ggga 129
||||
Sbjct: 146 ggga 149
Score = 65.9 bits (33), Expect = 7e-12
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 80 atacatccgtatctagactaatctaagacaagaattttgggacggagggagta 132
|||||||| ||| ||||| ||| |||||||| |||||||||||||||||||||
Sbjct: 78 atacatccatatttagacaaatttaagacaacaattttgggacggagggagta 26
>54762_tur-miR1122:pmrd
Length = 180
Score = 69.9 bits (35), Expect = 5e-13
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 32 cttagatttgtctaaatacgtatgtatcaagtcatgttttagtattagatacatccgtat 91
|||||||||||||| ||||| |||||| | ||| ||||||| |||||||||| |||||
Sbjct: 52 cttagatttgtctacatacgaatgtatttattcacattttagtgttagatacattcgtat 111
Query: 92 ctagactaatctaagacaagaattttgggacggagggagtata 134
|| | ||| ||||| |||||||||||||| |||| ||||||
Sbjct: 112 ttaaataaatttaagataagaattttgggacagaggaagtata 154
>49537_osa-miRf10322-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagtataa 135
|||||||||||||||||||||||
Sbjct: 29 attttgggacggagggagtataa 7
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 atactccctccgtcccaaaa 24
||||||||||||||||||||
Sbjct: 9 atactccctccgtcccaaaa 28
>49536_osa-miRf10321-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagtataa 135
|||||||||||||||||||||||
Sbjct: 29 attttgggacggagggagtataa 7
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 atactccctccgtcccaaaa 24
||||||||||||||||||||
Sbjct: 9 atactccctccgtcccaaaa 28
>49517_osa-miRf10302-akr:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagtataa 135
|||||||||||||||||||||||
Sbjct: 78 attttgggacggagggagtataa 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 4 aatactccctccgtcccaaaa 24
|||||||||||||||||||||
Sbjct: 5 aatactccctccgtcccaaaa 25
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagtat 133
|||||||||||||||||||||
Sbjct: 26 attttgggacggagggagtat 6
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 5 atactccctccgtcccaaaa 24
||||||||||||||||||||
Sbjct: 98 atactccctccgtcccaaaa 79
>49366_osa-miRf10151-akr:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagtata 134
||||||||||||||||||||||
Sbjct: 60 attttgggacggagggagtata 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 5 atactccctccgtcccaaaa 24
||||||||||||||||||||
Sbjct: 80 atactccctccgtcccaaaa 61
>50953_osa-miRf11738-akr:pmrd
Length = 162
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 atactccctccgtcccaaaaa 25
|||||||||||||||||||||
Sbjct: 9 atactccctccgtcccaaaaa 29
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 114 ttttgggacggagggagtat 133
||||||||||||||||||||
Sbjct: 28 ttttgggacggagggagtat 9
>49958_osa-miRf10743-akr:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagtat 133
|||||||||||||||||||||
Sbjct: 31 attttgggacggagggagtat 11
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 atactccctccgtcccaaaa 24
||||||||||||||||||||
Sbjct: 11 atactccctccgtcccaaaa 30
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 91 attttgggacggagggagta 110
>49957_osa-miRf10742-akr:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagtat 133
|||||||||||||||||||||
Sbjct: 96 attttgggacggagggagtat 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 36 attttgggacggagggagta 17
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 5 atactccctccgtcccaaaa 24
||||||||||||||||||||
Sbjct: 116 atactccctccgtcccaaaa 97
>49433_osa-miRf10218-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 114 ttttgggacggagggagtata 134
|||||||||||||||||||||
Sbjct: 29 ttttgggacggagggagtata 9
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 atactccctccgtcccaaaaa 25
|||||||||||||||||||||
Sbjct: 10 atactccctccgtcccaaaaa 30
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 5 atactccctccgtcccaaaaa 25
|||||||||||||||||||||
Sbjct: 84 atactccctccgtcccaaaaa 64
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 114 ttttgggacggagggagtat 133
||||||||||||||||||||
Sbjct: 65 ttttgggacggagggagtat 84
>49156_osa-miR1862e:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagtat 133
|||||||||||||||||||||
Sbjct: 72 attttgggacggagggagtat 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 5 atactccctccgtcccaaaa 24
||||||||||||||||||||
Sbjct: 92 atactccctccgtcccaaaa 73
>49155_osa-miR1862d:pmrd
Length = 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagtat 133
|||||||||||||||||||||
Sbjct: 103 attttgggacggagggagtat 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 5 atactccctccgtcccaaaa 24
||||||||||||||||||||
Sbjct: 123 atactccctccgtcccaaaa 104
>49152_osa-miR1862a:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagtat 133
|||||||||||||||||||||
Sbjct: 68 attttgggacggagggagtat 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 5 atactccctccgtcccaaaa 24
||||||||||||||||||||
Sbjct: 88 atactccctccgtcccaaaa 69
>48648_hpr-miR1120:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagtat 133
|||||||||||||||||||||
Sbjct: 61 attttgggacggagggagtat 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 25 attttgggacggagggagta 6
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 5 atactccctccgtcccaaaa 24
||||||||||||||||||||
Sbjct: 81 atactccctccgtcccaaaa 62
>50920_osa-miRf11705-akr:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 103 attttgggacggagggagta 122
>50820_osa-miRf11605-akr:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 76 attttgggacggagggagta 95
>50819_osa-miRf11604-akr:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 76 attttgggacggagggagta 95
>50818_osa-miRf11603-akr:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 26 attttgggacggagggagta 7
>50485_osa-miRf11270-akr:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaaa 25
||||||||||||||||||||
Sbjct: 76 tactccctccgtcccaaaaa 57
>50434_osa-miRf11219-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaaa 25
||||||||||||||||||||
Sbjct: 7 tactccctccgtcccaaaaa 26
>50433_osa-miRf11218-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaaa 25
||||||||||||||||||||
Sbjct: 117 tactccctccgtcccaaaaa 98
>50431_osa-miRf11216-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tttgggacggagggagtata 134
||||||||||||||||||||
Sbjct: 9 tttgggacggagggagtata 28
>50234_osa-miRf11019-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaaa 25
||||||||||||||||||||
Sbjct: 6 tactccctccgtcccaaaaa 25
>49818_osa-miRf10603-akr:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 73 attttgggacggagggagta 92
>49784_osa-miRf10569-akr:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 30 attttgggacggagggagta 11
>49783_osa-miRf10568-akr:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 30 attttgggacggagggagta 11
>49658_osa-miRf10443-akr:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaaa 25
||||||||||||||||||||
Sbjct: 14 tactccctccgtcccaaaaa 33
>49637_osa-miRf10422-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaaa 25
||||||||||||||||||||
Sbjct: 96 tactccctccgtcccaaaaa 77
>49636_osa-miRf10421-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaaa 25
||||||||||||||||||||
Sbjct: 96 tactccctccgtcccaaaaa 77
>49596_osa-miRf10381-akr:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 20 attttgggacggagggagta 1
>49370_osa-miRf10155-akr:pmrd
Length = 69
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaaa 25
||||||||||||||||||||
Sbjct: 66 tactccctccgtcccaaaaa 47
>49314_osa-miRf10099-akr:pmrd
Length = 144
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 attttgggacggagggagta 132
||||||||||||||||||||
Sbjct: 33 attttgggacggagggagta 14
