miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48975_osa-miR408:pmrd
Length = 213
Score = 93.7 bits (47), Expect = 5e-20
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 147 tgttgttgctccctcccctgcactgcctcttccctggctcccctgca 193
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccctgca 182
Score = 54.0 bits (27), Expect = 4e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 5 ggagaggagacagggatggagcagagcaagggatggggc 43
|||||||||||||||||| |||||||| ||||||||||
Sbjct: 21 ggagaggagacagggatgaggcagagcatgggatggggc 59
>55104_zma-miR408:pmrd
Length = 191
Score = 83.8 bits (42), Expect = 5e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 146 gtgttgttgctccctcccctgcactgcctcttccctggctcc 187
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggctcc 175
Score = 40.1 bits (20), Expect = 6e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 ggagacagggatggagcagagcaagggatggggcaaacaacaaa 53
||||||||||||| ||||||| |||||||||| | |||||||
Sbjct: 18 ggagacagggatgagacagagcatgggatggggccatcaacaaa 61
>54648_sof-miR408c:pmrd
Length = 286
Score = 83.8 bits (42), Expect = 5e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 144 tggtgttgttgctccctcccctgcactgcctcttccctggctcccc 189
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 227 tggtgttgttgcttcctcccctgcactgcctcttccctggctcccc 272
Score = 48.1 bits (24), Expect = 3e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 10 ggagacagggatggagcagagcaagggatggggcaaacaacaaa 53
||||||||||||| |||||||| |||||||||| | |||||||
Sbjct: 18 ggagacagggatgaggcagagcatgggatggggccatcaacaaa 61
>54647_sof-miR408b:pmrd
Length = 286
Score = 83.8 bits (42), Expect = 5e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 144 tggtgttgttgctccctcccctgcactgcctcttccctggctcccc 189
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 227 tggtgttgttgcttcctcccctgcactgcctcttccctggctcccc 272
Score = 48.1 bits (24), Expect = 3e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 10 ggagacagggatggagcagagcaagggatggggcaaacaacaaa 53
||||||||||||| |||||||| |||||||||| | |||||||
Sbjct: 18 ggagacagggatgaggcagagcatgggatggggccatcaacaaa 61
>54690_tae-miR408:pmrd
Length = 187
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 1 gaggggagaggagacagggatggagcagagcaagggatggggcaaacaacaaa 53
|||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 15 gaggggggaggagacagggatggagcagagcaagggatgaggcaagcaacaaa 67
Score = 71.9 bits (36), Expect = 2e-13
Identities = 43/44 (97%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 147 tgttgttgctccctcccctgcactgcctcttccctggctcccct 190
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggctcccct 162
>54646_sof-miR408a:pmrd
Length = 283
Score = 77.8 bits (39), Expect = 3e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 147 tgttgttgctccctcccctgcactgcctcttccctggctcccc 189
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 227 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 269
Score = 40.1 bits (20), Expect = 6e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 ggagacagggatggagcagagcaagggatggggcaaacaacaaa 53
||||||||||||| |||||||| |||||| ||| | |||||||
Sbjct: 18 ggagacagggatgaggcagagcatgggatgaggccatcaacaaa 61
>54649_sof-miR408d:pmrd
Length = 215
Score = 75.8 bits (38), Expect = 1e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 144 tggtgttgttgctccctcccctgcactgcctcttccctggctcccc 189
||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 156 tggtgttgttgcttccacccctgcactgcctcttccctggctcccc 201
Score = 40.1 bits (20), Expect = 6e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 ggagacagggatggagcagagcaagggatggggcaaacaacaaa 53
||||||||||| | |||||||| |||||||||| | |||||||
Sbjct: 18 ggagacagggacgaggcagagcatgggatggggccatcaacaaa 61
>54499_sbi-miR408:pmrd
Length = 205
Score = 75.8 bits (38), Expect = 1e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 144 tggtgttgttgctccctcccctgcactgcctcttccctggct 185
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 164 tggtgttgttgcttcctcccctgcactgcctcttccctggct 205
>54650_sof-miR408e:pmrd
Length = 283
Score = 54.0 bits (27), Expect = 4e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 147 tgttgttgctccctcccctgcactgcctcttccctggctcccc 189
|||||||||| || |||||||||| |||||||||||||||||
Sbjct: 227 tgttgttgcttacttccctgcactgactcttccctggctcccc 269
Score = 40.1 bits (20), Expect = 6e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 ggagacagggatggagcagagcaagggatggggcaaacaacaaa 53
||||||||||||| |||||||| |||||| ||| | |||||||
Sbjct: 18 ggagacagggatgaggcagagcatgggatgaggccatcaacaaa 61
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 161 cccctgcactgcctcttccctggct 185
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48428_cpt-miR408:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 158 cctcccctgcactgcctcttccctggctc 186
|||||| ||||||||||||||||||||||
Sbjct: 64 cctcccatgcactgcctcttccctggctc 92
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 165 tgcactgcctcttccctggctccc 188
||||||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctccc 2
>47031_ath-miR408:pmrd
Length = 218
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 165 tgcactgcctcttccctggctccc 188
||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 165 tgcactgcctcttccctggctc 186
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 165 tgcactgcctcttccctggctc 186
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>51397_ppt-miR408b:pmrd
Length = 144
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 165 tgcactgcctcttccctggctcccct 190
||||||||||||||||||||| ||||
Sbjct: 94 tgcactgcctcttccctggcttccct 119
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 tgcactgcctcttccctggct 185
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 tgcactgcctcttccctggct 185
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 tgcactgcctcttccctggct 185
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 165 tgcactgcctcttccctggct 185
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
