miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51384_ppt-miR319a:pmrd
          Length = 169

 Score =  335 bits (169), Expect = 8e-93
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                       
Query: 20  gtggagctccgtttcggtccaatagtggctgcgacggaaggtggtcccgctgccgaatca 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtggagctccgtttcggtccaatagtggctgcgacggaaggtggtcccgctgccgaatca 60

                                                                       
Query: 80  cacgtccgggttgcttatcggggcagggccccgatacggtatccgaacgtttgtcccggg 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cacgtccgggttgcttatcggggcagggccccgatacggtatccgaacgtttgtcccggg 120

                                                            
Query: 140 aactggtcgaccttccgcccggcgtctcttggactgaagggagctccac 188
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aactggtcgaccttccgcccggcgtctcttggactgaagggagctccac 169




>51389_ppt-miR319d:pmrd
          Length = 170

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 164 tctcttggactgaagggagctcc 186
           |||||||||||||||||||||||
Sbjct: 142 tctcttggactgaagggagctcc 164




>51388_ppt-miR319d:pmrd
          Length = 170

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 164 tctcttggactgaagggagctcc 186
           |||||||||||||||||||||||
Sbjct: 142 tctcttggactgaagggagctcc 164




>51387_ppt-miR319d:pmrd
          Length = 170

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 164 tctcttggactgaagggagctcc 186
           |||||||||||||||||||||||
Sbjct: 142 tctcttggactgaagggagctcc 164




>51386_ppt-miR319c:pmrd
          Length = 189

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 164 tctcttggactgaagggagctcc 186
           |||||||||||||||||||||||
Sbjct: 151 tctcttggactgaagggagctcc 173




>51385_ppt-miR319b:pmrd
          Length = 160

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 164 tctcttggactgaagggagctcc 186
           |||||||||||||||||||||||
Sbjct: 137 tctcttggactgaagggagctcc 159




>51390_ppt-miR319e:pmrd
          Length = 174

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 165 ctcttggactgaagggagctcc 186
           ||||||||||||||||||||||
Sbjct: 145 ctcttggactgaagggagctcc 166




>54843_vvi-miR319b:pmrd
          Length = 194

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 166 tcttggactgaagggagctcc 186
           |||||||||||||||||||||
Sbjct: 161 tcttggactgaagggagctcc 181




>48687_ltu-miR319:pmrd
          Length = 167

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 166 tcttggactgaagggagctcc 186
           |||||||||||||||||||||
Sbjct: 146 tcttggactgaagggagctcc 166




>54846_vvi-miR319f:pmrd
          Length = 193

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctcc 180




>54844_vvi-miR319c:pmrd
          Length = 182

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctcc 169




>54686_tae-miR319a:pmrd
          Length = 196

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctcc 195




>54583_smo-miR319:pmrd
          Length = 215

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204




>54380_pvu-miR319c:pmrd
          Length = 734

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428




>51713_ptc-miR319g:pmrd
          Length = 204

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcc 194




>51712_ptc-miR319f:pmrd
          Length = 202

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192




>51710_ptc-miR319d:pmrd
          Length = 193

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctcc 183




>51709_ptc-miR319c:pmrd
          Length = 196

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctcc 186




>51707_ptc-miR319a:pmrd
          Length = 188

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctcc 178




>51562_pta-miR319:pmrd
          Length = 206

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 166 tcttggactgaagggagctccact 189
           ||||||| ||||||||||||||||
Sbjct: 28  tcttggattgaagggagctccact 5



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 ttggactgaagggagctcca 187
           ||||||||||||||||||||
Sbjct: 184 ttggactgaagggagctcca 203




>51553_pta-miR159a:pmrd
          Length = 210

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ttggactgaagggagctcca 187
           ||||||||||||||||||||
Sbjct: 27  ttggactgaagggagctcca 8



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 166 tcttggactgaagggagctccact 189
           ||||||| ||||||||||||||||
Sbjct: 183 tcttggattgaagggagctccact 206




>51547_psi-miR159:pmrd
          Length = 193

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ttggactgaagggagctcca 187
           ||||||||||||||||||||
Sbjct: 20  ttggactgaagggagctcca 1




>51351_ppl-miR319:pmrd
          Length = 204

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192




>48573_gma-miR319b:pmrd
          Length = 208

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctcc 188




>48572_gma-miR319a:pmrd
          Length = 207

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187




>46993_ath-miR319b:pmrd
          Length = 172

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctcc 170




>46884_aqc-miR319:pmrd
          Length = 177

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173