miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51517_ppt-miR1219a:pmrd
Length = 135
Score = 268 bits (135), Expect = 1e-72
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 4 tgaagtgtggacgatggagagtcagcctcttcctgcctctcactagcttcatcccttcct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaagtgtggacgatggagagtcagcctcttcctgcctctcactagcttcatcccttcct 60
Query: 64 ccctaaattttagtctgggagggaaggagctattggtggtcaggaatagcgcacccttca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccctaaattttagtctgggagggaaggagctattggtggtcaggaatagcgcacccttca 120
Query: 124 tttatccacacttca 138
|||||||||||||||
Sbjct: 121 tttatccacacttca 135
>51520_ppt-miR1219d:pmrd
Length = 136
Score = 77.8 bits (39), Expect = 2e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 33 ttcctgcctctcactagcttcatcccttcctccctaaattttagtctgggagggaaggag 92
||||||||||||||||||||| ||||| ||| ||| | | ||||||||||| ||||||
Sbjct: 30 ttcctgcctctcactagcttcttccctccctgcctgagtcgcagtctgggaggtaaggag 89
Query: 93 ctattggtggtcaggaatagcgc 115
|||||||| | ||||||||||||
Sbjct: 90 ctattggtagacaggaatagcgc 112
>51519_ppt-miR1219c:pmrd
Length = 152
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 28 gcctcttcctgcctctcactagcttcatccct 59
||||||||||||||||||||||||||||||||
Sbjct: 2 gcctcttcctgcctctcactagcttcatccct 33
>51518_ppt-miR1219b:pmrd
Length = 78
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 30 ctcttcctgcctctcactagcttcatcccttc 61
||||||||||||||||||||||||||||||||
Sbjct: 1 ctcttcctgcctctcactagcttcatcccttc 32
