miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51427_ppt-miR536d:pmrd
Length = 443
Score = 710 bits (358), Expect = 0.0
Identities = 393/408 (96%), Gaps = 1/408 (0%)
Strand = Plus / Plus
Query: 1 cgtcccttggaagccgcagtttggcacgaagccctttctcctgccgctactgttttgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 cgtcccttggaagccgcagtttggcacgaagccctttctcctgccgctactgttttgtta 78
Query: 61 gtcaggtttgcagcgtgtctcgatatagtggtgtgcttccgttgctatcctttccctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 gtcaggtttgcagcgtgtctcgatatagtggtgtgcttccgttgctatcctttccctcca 138
Query: 121 ggtaggaattctgtggcaaactagtggttggttcgcttatcaagttgcagtccttcatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ggtaggaattctgtggcaaactagtggttggttcgcttatcaagttgcagtccttcatac 198
Query: 181 cttgattttgaattactgcagtcacacccttcttgtcggcagnnnnnnnnnnnnnnngtg 240
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 199 cttgattttgaattactgcagtcacacccttcttgtcggcag-ttttttttttttttgtg 257
Query: 241 tgtcctaccgactgcactgactgcagaaagtcgaagcaatggaggtgtcgttgcattttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgtcctaccgactgcactgactgcagaaagtcgaagcaatggaggtgtcgttgcattttc 317
Query: 301 ctcatagttttgctagcttctacttctgggttgatgttgaacccactccacccacttgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctcatagttttgctagcttctacttctgggttgatgttgaacccactccacccacttgta 377
Query: 361 gcggaaagatgttagaatttcgtgccaagctgtgtgcaaccaaggggt 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcggaaagatgttagaatttcgtgccaagctgtgtgcaaccaaggggt 425
>51425_ppt-miR536b:pmrd
Length = 222
Score = 65.9 bits (33), Expect = 2e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 356 ttgtagcggaaagatgttagaatttcgtgccaagctgtgtgcaaccaaggggt 408
||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 128 ttgtagcggaatgataccagaaattcgtgccaagctgtgtgcaaccaaggggt 180
>51428_ppt-miR536e:pmrd
Length = 464
Score = 54.0 bits (27), Expect = 9e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 378 tttcgtgccaagctgtgtgcaaccaag 404
|||||||||||||||||||||||||||
Sbjct: 438 tttcgtgccaagctgtgtgcaaccaag 464
Score = 50.1 bits (25), Expect = 1e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 cccttggaagccgcagtttggcacgaagc 32
||||||||||||||||||||||| |||||
Sbjct: 22 cccttggaagccgcagtttggcatgaagc 50
>51424_ppt-miR536a:pmrd
Length = 199
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 379 ttcgtgccaagctgtgtgcaacc 401
|||||||||||||||||||||||
Sbjct: 163 ttcgtgccaagctgtgtgcaacc 185
