miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51428_ppt-miR536e:pmrd
Length = 464
Score = 896 bits (452), Expect = 0.0
Identities = 455/456 (99%)
Strand = Plus / Plus
Query: 1 tcctaagtgtctccccttggaagccgcagtttggcatgaagcacttattcctttgcgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tcctaagtgtctccccttggaagccgcagtttggcatgaagcacttattcctttgcgcat 68
Query: 61 ccattttgtgactgcttgtattgagtcgaatccaattccttgccttctacttccttccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ccattttgtgactgcttgtattgagtcgaatccaattccttgccttctacttccttccaa 128
Query: 121 tctagatcactcctggtttttcacattgtttggttgttgggggtcatattgtttgtatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tctagatcactcctggtttttcacattgtttggttgttgggggtcatattgtttgtatac 188
Query: 181 cttttttcgcacgaaatcttcaatttgaaagacgctgttggaaactctaatttcgaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cttttttcgcacgaaatcttcaatttgaaagacgctgttggaaactctaatttcgaattt 248
Query: 241 ctgcagccacacccaatagtttgaggtcttgtcggtatcttcctttgcgcgcctacttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctgcagccacacccaatagtttgaggtcttgtcggtatcttcctttgcgcgcctacttca 308
Query: 301 gtgactgcagaaagtcactgcagtcactaccggggacgaacatactagcactgttaatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtgactgcagaaagtcactgcagtcactaccggggacgaacatactagcactgttaatct 368
Query: 361 ctctatactcgtcaatcttcagttgtccatgcacgatttctccctaaaattattgagggg 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cactatactcgtcaatcttcagttgtccatgcacgatttctccctaaaattattgagggg 428
Query: 421 atatcagagtttcgtgccaagctgtgtgcaaccaag 456
||||||||||||||||||||||||||||||||||||
Sbjct: 429 atatcagagtttcgtgccaagctgtgtgcaaccaag 464
>51427_ppt-miR536d:pmrd
Length = 443
Score = 58.0 bits (29), Expect = 6e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 430 tttcgtgccaagctgtgtgcaaccaaggg 458
|||||||||||||||||||||||||||||
Sbjct: 395 tttcgtgccaagctgtgtgcaaccaaggg 423
Score = 50.1 bits (25), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 cccttggaagccgcagtttggcatgaagc 42
||||||||||||||||||||||| |||||
Sbjct: 22 cccttggaagccgcagtttggcacgaagc 50
>51425_ppt-miR536b:pmrd
Length = 222
Score = 56.0 bits (28), Expect = 3e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 431 ttcgtgccaagctgtgtgcaaccaaggg 458
||||||||||||||||||||||||||||
Sbjct: 151 ttcgtgccaagctgtgtgcaaccaaggg 178
>51424_ppt-miR536a:pmrd
Length = 199
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 431 ttcgtgccaagctgtgtgcaacc 453
|||||||||||||||||||||||
Sbjct: 163 ttcgtgccaagctgtgtgcaacc 185
>51429_ppt-miR536f:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 4e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 431 ttcgtgccaagctgtgtgcaaccaaggga 459
|||||||||||||||||||| | ||||||
Sbjct: 127 ttcgtgccaagctgtgtgcatctaaggga 155
