miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51394_ppt-miR390c:pmrd
Length = 135
Score = 83.8 bits (42), Expect = 5e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 178 ggtataattacagagctcaggagggatagcgcccatctcagt 219
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtataattacagagctcaggagggatagcgcccatctcagt 42
>51393_ppt-miR390c:pmrd
Length = 135
Score = 83.8 bits (42), Expect = 5e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 178 ggtataattacagagctcaggagggatagcgcccatctcagt 219
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtataattacagagctcaggagggatagcgcccatctcagt 42
>51392_ppt-miR390b:pmrd
Length = 175
Score = 50.1 bits (25), Expect = 7e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 168 gctgctggtaggtataattacagagctcaggagggatagcgccca 212
|||||||| || || |||||| ||||||||||||||||||||||
Sbjct: 6 gctgctgggagatacaattacgaagctcaggagggatagcgccca 50
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgccc 211
|||||||||||||||||||||
Sbjct: 5 agctcaggagggatagcgccc 25
>51719_ptc-miR390d:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgccc 211
|||||||||||||||||||||
Sbjct: 12 agctcaggagggatagcgccc 32
>51717_ptc-miR390b:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgccc 211
|||||||||||||||||||||
Sbjct: 12 agctcaggagggatagcgccc 32
>55055_zma-miR390:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 2 agctcaggagggatagcgcc 21
>54848_vvi-miR390:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 12 agctcaggagggatagcgcc 31
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 15 agctcaggagggatagcgcc 34
>51718_ptc-miR390c:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 12 agctcaggagggatagcgcc 31
>51716_ptc-miR390a:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 12 agctcaggagggatagcgcc 31
>51391_ppt-miR390a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 17 agctcaggagggatagcgcc 36
>48916_osa-miR390:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 20 agctcaggagggatagcgcc 39
>48729_mtr-miR390:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 2 agctcaggagggatagcgcc 21
>48500_ghr-miR390c:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 12 agctcaggagggatagcgcc 31
>48499_ghr-miR390b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 19 agctcaggagggatagcgcc 38
>48498_ghr-miR390a:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgcc 35
>48372_bna-miR390c:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 24 agctcaggagggatagcgcc 43
>48371_bna-miR390b:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 19 agctcaggagggatagcgcc 38
>48370_bna-miR390a:pmrd
Length = 144
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 34 agctcaggagggatagcgcc 53
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 19 agctcaggagggatagcgcc 38
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 2 agctcaggagggatagcgcc 21
>46996_ath-miR390b:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 16 agctcaggagggatagcgcc 35
>46995_ath-miR390a:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 agctcaggagggatagcgcc 210
||||||||||||||||||||
Sbjct: 19 agctcaggagggatagcgcc 38
