miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51434_ppt-miR538a:pmrd
Length = 179
Score = 355 bits (179), Expect = 8e-99
Identities = 179/179 (100%)
Strand = Plus / Plus
Query: 15 ttacaatgagtttgtgagtctccatgctgctctaacattgcatggagtctatgtctggag 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttacaatgagtttgtgagtctccatgctgctctaacattgcatggagtctatgtctggag 60
Query: 75 tattgtccttcattcccgtgcaaatgctgaagtaatgcaagaatgtgaacattgggacta 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tattgtccttcattcccgtgcaaatgctgaagtaatgcaagaatgtgaacattgggacta 120
Query: 135 ttccagacgtagccttcatgcatgttagagtgatgtggaaacccgtgaactacttgtaa 193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttccagacgtagccttcatgcatgttagagtgatgtggaaacccgtgaactacttgtaa 179
>51436_ppt-miR538c:pmrd
Length = 160
Score = 69.9 bits (35), Expect = 7e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 15 ttacaatgagtttgtgagtctccatgctgctctaacattgcatggagtctatgtctgga 73
|||||| ||||| |||||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 1 ttacaaagagttcttgagtctccatgcttctctgacgttgcatggagtctatgtctgga 59
Score = 44.1 bits (22), Expect = 4e-05
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 144 tagccttcatgcatgttagagtgatgtggaaacccgtgaactacttgtaa 193
||||||||||||||| |||||| |||| ||||||||||||||||||
Sbjct: 111 tagccttcatgcatgctagagtatcatggaggcccgtgaactacttgtaa 160
>51435_ppt-miR538b:pmrd
Length = 118
Score = 60.0 bits (30), Expect = 7e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 36 ccatgctgctctaacattgcatggagtctatgtctgga 73
||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ccatgcttctctaacgttgcatggagtctatgtctgga 38
