miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>53841_ptc-miRf12019-akr:pmrd
          Length = 98

 Score = 75.8 bits (38), Expect = 9e-15
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                     
Query: 113 atttgggatcatgctatccctttggattcctcctttggtggc 154
           |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 57  attttggatcatgctatccctttggattcctcctttggtggc 98



 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                 
Query: 11 gcaactggaggaggcatccaaagggatcgcattgatccc 49
          |||||| ||||||||||||||||||||||||||||||||
Sbjct: 1  gcaactagaggaggcatccaaagggatcgcattgatccc 39




>51972_ptc-miRf10150-akr:pmrd
          Length = 98

 Score = 75.8 bits (38), Expect = 9e-15
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                     
Query: 113 atttgggatcatgctatccctttggattcctcctttggtggc 154
           |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 42  attttggatcatgctatccctttggattcctcctttggtggc 1



 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                 
Query: 11 gcaactggaggaggcatccaaagggatcgcattgatccc 49
          |||||| ||||||||||||||||||||||||||||||||
Sbjct: 98 gcaactagaggaggcatccaaagggatcgcattgatccc 60




>51950_ptc-miRf10128-akr:pmrd
          Length = 99

 Score = 75.8 bits (38), Expect = 9e-15
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                     
Query: 113 atttgggatcatgctatccctttggattcctcctttggtggc 154
           |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 58  attttggatcatgctatccctttggattcctcctttggtggc 99



 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 11 gcaactggaggaggcatccaaagggatcgcattgatcccaa 51
          |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1  gcaactagaggaggcatccaaagggatcgcattgatcccaa 41




>48731_mtr-miR393b:pmrd
          Length = 119

 Score = 75.8 bits (38), Expect = 9e-15
 Identities = 51/54 (94%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 89  cttaattcccttaat-tctcacaatatttgggatcatgctatccctttggattc 141
           ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 64  cttaatttccttaatatctcataatatttgggatcatgctatccctttggattc 117



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 22 aggcatccaaagggatcgcattgatcccaaatct 55
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  aggcatccaaagggatcgcattgatcccaaatct 34




>48576_gma-miR393:pmrd
          Length = 120

 Score = 75.8 bits (38), Expect = 9e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 17 ggaggaggcatccaaagggatcgcattgatcccaaatc 54
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaggaggcatccaaagggatcgcattgatcccaaatc 38



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 112 tatttgggatcatgctatccctttggattcctccttt 148
           ||||||||||||||||||||||||||||| |||||||
Sbjct: 84  tatttgggatcatgctatccctttggatttctccttt 120




>48730_mtr-miR393:pmrd
          Length = 135

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 8  actgcaactggaggaggcatccaaagggatcgcattgatcc 48
          ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2  actgcaacttgaggaggcatccaaagggatcgcattgatcc 42



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 115 ttgggatcatgctatccctttggattcctccttt 148
           |||||||||||| ||||||||||||| |||||||
Sbjct: 93  ttgggatcatgccatccctttggatttctccttt 126




>54850_vvi-miR393b:pmrd
          Length = 83

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 17 ggaggaggcatccaaagggatcgcattgatcccaaa 52
          ||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaggaggcatccaaagggatcgcattgatcccaaa 36



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 118 ggatcatgctatccctttggattcctcctttgg 150
           |||||||||||||||||||||||||||||||||
Sbjct: 51  ggatcatgctatccctttggattcctcctttgg 83




>53840_ptc-miRf12018-akr:pmrd
          Length = 92

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 113 atttgggatcatgctatccctttggattcctcctttggt 151
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 54  attttggatcatgctatccctttggattcctcctttggt 92



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 18 gaggaggcatccaaagggatcgcattgatccc 49
          ||||||||||||||||||||||||||||||||
Sbjct: 5  gaggaggcatccaaagggatcgcattgatccc 36




>52949_ptc-miRf11127-akr:pmrd
          Length = 93

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 113 atttgggatcatgctatccctttggattcctcctttggt 151
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 55  attttggatcatgctatccctttggattcctcctttggt 93



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 18 gaggaggcatccaaagggatcgcattgatcccaa 51
          ||||||||||||||||||||||||||||||||||
Sbjct: 5  gaggaggcatccaaagggatcgcattgatcccaa 38




>52948_ptc-miRf11126-akr:pmrd
          Length = 93

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 113 atttgggatcatgctatccctttggattcctcctttggt 151
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 55  attttggatcatgctatccctttggattcctcctttggt 93



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 18 gaggaggcatccaaagggatcgcattgatcccaa 51
          ||||||||||||||||||||||||||||||||||
Sbjct: 5  gaggaggcatccaaagggatcgcattgatcccaa 38




>52374_ptc-miRf10552-akr:pmrd
          Length = 92

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 113 atttgggatcatgctatccctttggattcctcctttggt 151
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 54  attttggatcatgctatccctttggattcctcctttggt 92



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 18 gaggaggcatccaaagggatcgcattgatccc 49
          ||||||||||||||||||||||||||||||||
Sbjct: 5  gaggaggcatccaaagggatcgcattgatccc 36




>51720_ptc-miR393a:pmrd
          Length = 85

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 18 gaggaggcatccaaagggatcgcattgatcccaa 51
          ||||||||||||||||||||||||||||||||||
Sbjct: 2  gaggaggcatccaaagggatcgcattgatcccaa 35



 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 113 atttgggatcatgctatccctttggattcctcct 146
           |||| |||||||||||||||||||||||||||||
Sbjct: 52  attttggatcatgctatccctttggattcctcct 85




>51721_ptc-miR393b:pmrd
          Length = 84

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 18 gaggaggcatccaaagggatcgcattgatccc 49
          ||||||||||||||||||||||||||||||||
Sbjct: 2  gaggaggcatccaaagggatcgcattgatccc 33



 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 113 atttgggatcatgctatccctttggattcctcct 146
           |||| |||||||||||||||||||||||||||||
Sbjct: 51  attttggatcatgctatccctttggattcctcct 84




>54470_sbi-miR393:pmrd
          Length = 139

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 15 ctggaggaggcatccaaagggatcgcattgatcc 48
          |||||||| |||||||||||||||||||||||||
Sbjct: 9  ctggaggaagcatccaaagggatcgcattgatcc 42




>48917_osa-miR393:pmrd
          Length = 115

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 24 gcatccaaagggatcgcattgatcc 48
          |||||||||||||||||||||||||
Sbjct: 8  gcatccaaagggatcgcattgatcc 32




>54849_vvi-miR393a:pmrd
          Length = 126

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 27 tccaaagggatcgcattgatccca 50
          ||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatccca 34




>47287_ath-miRf10187-akr:pmrd
          Length = 162

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 atccaaagggatcgcattgatcc 48
          |||||||||||||||||||||||
Sbjct: 11 atccaaagggatcgcattgatcc 33




>47214_ath-miRf10114-akr:pmrd
          Length = 131

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 atccaaagggatcgcattgatcc 48
          |||||||||||||||||||||||
Sbjct: 9  atccaaagggatcgcattgatcc 31



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 118 ggatcatgctatccctttggattcctcctt 147
           ||||||||||||| |||||||||| |||||
Sbjct: 102 ggatcatgctatctctttggattcatcctt 131




>46999_ath-miR393b:pmrd
          Length = 160

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 atccaaagggatcgcattgatcc 48
          |||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32




>46998_ath-miR393a:pmrd
          Length = 133

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 atccaaagggatcgcattgatcc 48
          |||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 118 ggatcatgctatccctttggattcctcctt 147
           ||||||||||||| |||||||||| |||||
Sbjct: 103 ggatcatgctatctctttggattcatcctt 132




>55062_zma-miR393f:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 27 tccaaagggatcgcattgatcc 48
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>55057_zma-miR393a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 27 tccaaagggatcgcattgatcc 48
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>48373_bna-miR393:pmrd
          Length = 127

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 27 tccaaagggatcgcattgatcc 48
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>55063_zma-miR393g:pmrd
          Length = 87

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>55061_zma-miR393e:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 87 tccaaagggatcgcattgatc 67




>55060_zma-miR393d:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 89 tccaaagggatcgcattgatc 69




>55059_zma-miR393c:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 3  tccaaagggatcgcattgatc 23




>55058_zma-miR393b:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 3  tccaaagggatcgcattgatc 23




>55056_zma-miR393:pmrd
          Length = 126

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>51723_ptc-miR393d:pmrd
          Length = 107

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>51722_ptc-miR393c:pmrd
          Length = 107

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>48919_osa-miR393b:pmrd
          Length = 132

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47




>48918_osa-miR393b:pmrd
          Length = 132

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47




>48501_ghr-miR393:pmrd
          Length = 119

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 tccaaagggatcgcattgatc 47
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21