miRNEST 2.0, an integrative microRNA resource :: BLAST
>48578_gma-miR396a:pmrd
Length = 140
Score = 204 bits (103), Expect = 1e-53
Identities = 132/141 (93%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 12 atggccctctttgtattcttccacagctttcttgaactgcattcaaagagttcctttgca 71
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3 atggctctctttgtattcttccacagctttcttgaactgcatccaaagagttcctttgca 62
Query: 72 tgcatgccatggcactcttgctcccaccacaccttgttttgcagttcaataaagctgtgg 131
||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||
Sbjct: 63 tgcatgccatggcactcttactcccaa---atcttgttttgcggttcaataaagctgtgg 119
Query: 132 gaagatacagatagggtcaac 152
|||||||||||||||||||||
Sbjct: 120 gaagatacagatagggtcaac 140
>48485_gcl-miR396a:pmrd
Length = 101
Score = 147 bits (74), Expect = 3e-36
Identities = 97/104 (93%), Gaps = 3/104 (2%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaactgcattcaaagagttcctttgcatgcatgccatggcactct 89
|||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatccatagagttccttggcatgcatgccatggcactct 42
Query: 90 tgctcccaccacaccttgttttgcagttcaataaagctgtggga 133
||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 41 tgctc---ccacaccttgttttgcggttcaataaagctgtggga 1
>48486_gcl-miR396b:pmrd
Length = 101
Score = 109 bits (55), Expect = 6e-25
Identities = 95/105 (90%), Gaps = 5/105 (4%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcattcaaagagttcctttgcatgcatgccatggca-ctc 88
||||| |||||||||||||||||| || |||||||||| ||||||||||||||||| |||
Sbjct: 1 ttccatagctttcttgaactgcatccatagagttccttrgcatgcatgccatggcatctc 60
Query: 89 ttgctcccaccacaccttgttttgcagttcaataaagctgtggga 133
||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 61 -tgctc---ccacaccttgttttgcggttcaataaagctgtggga 101
>48680_lja-miR396:pmrd
Length = 108
Score = 81.8 bits (41), Expect = 1e-16
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 17 cctctttgtattcttccacagctttcttgaactgcattcaa 57
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cctctttgtattcttccacagctttcttgaactgcattcaa 43
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 108 ttttgcagttcaataaagctgtgggaagatacagataggg 147
|||||| |||||||||||||||||||||||| ||||||||
Sbjct: 69 ttttgcggttcaataaagctgtgggaagatatagataggg 108
>54871_vvi-miR396d:pmrd
Length = 120
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgcatt 54
|||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatt 35
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 110 ttgcagttcaataaagctgtgggaagatac 139
|||| |||||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagatac 114
>51735_ptc-miR396b:pmrd
Length = 132
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 gttcaataaagctgtgggaagataca 140
||||||||||||||||||||||||||
Sbjct: 106 gttcaataaagctgtgggaagataca 131
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 16 ccctctttgtattcttccacagctttcttgaactgca 52
|||||| ||||||||||||||||||||||||||||||
Sbjct: 4 ccctctctgtattcttccacagctttcttgaactgca 40
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 109 tttgcagttcaataaagctgtgggaagatacaga 142
||||| ||||||||||||||||||||||||||||
Sbjct: 124 tttgcggttcaataaagctgtgggaagatacaga 157
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 107 gttttgcagttcaataaagctgtgggaagatacagatagggtca 150
|||||||||||||| |||||||||| | ||||||| |||||||
Sbjct: 44 gttttgcagttcaagaaagctgtggaagaatacagagagggtca 1
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 22 ttgtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||||
Sbjct: 1 ttgtattcttccacagctttcttgaactgca 31
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 gttcaataaagctgtgggaagataca 140
||||||||||||||||||||||||||
Sbjct: 104 gttcaataaagctgtgggaagataca 129
>55073_zma-miR396b:pmrd
Length = 136
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 12 atggccctctttgtattcttccacagctttcttgaactgcat 53
|||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 3 atggccttctttgtgatcttccacagctttcttgaactgcat 44
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 111 tgcagttcaataaagctgtgggaa 134
||||||||||||||||||||||||
Sbjct: 95 tgcagttcaataaagctgtgggaa 118
>54645_sof-miR396:pmrd
Length = 134
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 12 atggccctctttgtattcttccacagctttcttgaactgcat 53
|||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 3 atggccttctttgtgatcttccacagctttcttgaactgcat 44
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 111 tgcagttcaataaagctgtgggaa 134
||||||||||||||||||||||||
Sbjct: 93 tgcagttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 12 atggccctctttgtattcttccacagctttcttgaactgcat 53
|||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 3 atggccttctttgtgatcttccacagctttcttgaactgcat 44
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 111 tgcagttcaataaagctgtgggaa 134
||||||||||||||||||||||||
Sbjct: 87 tgcagttcaataaagctgtgggaa 110
>47008_ath-miR396a:pmrd
Length = 151
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 23 tgtattcttccacagctttcttgaactgca 52
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 109 tttgcagttcaataaagctgtgggaagatacaga 142
||||| ||||||||||||||||||||||||||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagatacaga 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 107 gttttgcagttcaataaagctgtgg 131
|||||||||||||| ||||||||||
Sbjct: 37 gttttgcagttcaagaaagctgtgg 13
>51734_ptc-miR396a:pmrd
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 24 gtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 110 ttgcagttcaataaagctgtgggaagataca 140
|||| ||||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagataca 122
>55079_zma-miR396h:pmrd
Length = 116
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gcagttcaataaagctgtgggaa 134
|||||||||||||||||||||||
Sbjct: 92 gcagttcaataaagctgtgggaa 114
>55074_zma-miR396c:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gcagttcaataaagctgtgggaa 134
|||||||||||||||||||||||
Sbjct: 80 gcagttcaataaagctgtgggaa 102
>55072_zma-miR396a:pmrd
Length = 137
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gcagttcaataaagctgtgggaa 134
|||||||||||||||||||||||
Sbjct: 97 gcagttcaataaagctgtgggaa 119
>54485_sbi-miR396a:pmrd
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gcagttcaataaagctgtgggaa 134
|||||||||||||||||||||||
Sbjct: 85 gcagttcaataaagctgtgggaa 107
>48946_osa-miR396b:pmrd
Length = 116
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 111 tgcagttcaataaagctgtgggaa 134
||||||||||||||||||||||||
Sbjct: 84 tgcagttcaataaagctgtgggaa 107
>48945_osa-miR396a:pmrd
Length = 154
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gcagttcaataaagctgtgggaa 134
|||||||||||||||||||||||
Sbjct: 123 gcagttcaataaagctgtgggaa 145
>55083_zma-miR396l:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 tgcagttcaataaagctgtggga 133
|||||||||||||||||||||||
Sbjct: 75 tgcagttcaataaagctgtggga 97
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 gcagttcaataaagctgtggga 133
||||||||||||||||||||||
Sbjct: 77 gcagttcaataaagctgtggga 98
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>46887_aqc-miR396a:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 109 tttgcagttcaataaagctgtgggaa 134
||||| ||||||||||||||||||||
Sbjct: 96 tttgcggttcaataaagctgtgggaa 121
>55082_zma-miR396k:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 tgcagttcaataaagctgtggga 133
|||||||||||||||||||||||
Sbjct: 76 tgcagttcaataaagctgtggga 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgc 51
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>54870_vvi-miR396c:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactg 50
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>48508_ghr-miR396c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgca 52
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 ttgcagttcaataaagctgtggga 133
|||| |||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>48507_ghr-miR396b:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgca 52
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 ttgcagttcaataaagctgtggga 133
|||| |||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
