miRNEST 2.0, an integrative microRNA resource :: BLAST
>54665_stu-miR168:pmrd
Length = 133
Score = 188 bits (95), Expect = 9e-49
Identities = 127/136 (93%), Gaps = 5/136 (3%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
Query: 72 ccagcgtaccggtaaaaac--taattttttacatgttgtctgtggcgtagtttgggtccc 129
|||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct: 61 gcagcttaccggtaaaaactttttttttttaca---tgtctgtggcgtagtttgggtccc 117
Query: 130 gccttgcatcaactga 145
||||||||||||||||
Sbjct: 118 gccttgcatcaactga 133
>54802_vvi-miR168:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 126 tcccgccttgcatcaactgaataggagac 154
|||||||||||||||||||||| ||||||
Sbjct: 101 tcccgccttgcatcaactgaatcggagac 129
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctctcattcgcttggtgcaggtcggga 31
|||| ||||||||||||||||||||||
Sbjct: 4 ctctaattcgcttggtgcaggtcggga 30
>51651_ptc-miR168b:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 121 ttgggtcccgccttgcatcaactgaataggaga 153
|||| |||||||||||||||||||||| |||||
Sbjct: 104 ttggatcccgccttgcatcaactgaatcggaga 136
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctctcattcgcttggtgcaggtcggga 31
|||| ||||||||||||||||||||||
Sbjct: 4 ctctaattcgcttggtgcaggtcggga 30
>51650_ptc-miR168a:pmrd
Length = 160
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 121 ttgggtcccgccttgcatcaactgaataggag 152
|||| |||||||||||||||||||||| ||||
Sbjct: 128 ttggatcccgccttgcatcaactgaatcggag 159
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctctcattcgcttggtgcaggtcggga 31
|||| ||||||||||||||||||||||
Sbjct: 4 ctctgattcgcttggtgcaggtcggga 30
>48560_gma-miR168:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 121 ttgggtcccgccttgcatcaactgaataggag 152
|||| |||||||||||||||||||||| ||||
Sbjct: 82 ttggatcccgccttgcatcaactgaatcggag 113
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctctcattcgcttggtgcaggtcggga 31
|||| ||||||||||||||||||||||
Sbjct: 12 ctctaattcgcttggtgcaggtcggga 38
>54546_sly-miR168:pmrd
Length = 145
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaggtcgggacct 34
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacct 23
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 120 tttgggtcccgccttgcatcaactga 145
||||||||| ||||||||||||||||
Sbjct: 120 tttgggtcctgccttgcatcaactga 145
>54388_rco-miR168:pmrd
Length = 156
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ctctcattcgcttggtgcaggtcggga 31
|||| ||||||||||||||||||||||
Sbjct: 12 ctctaattcgcttggtgcaggtcggga 38
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 121 ttgggtcccgccttgcatcaactgaat 147
|||| ||||||||||||||||||||||
Sbjct: 113 ttggatcccgccttgcatcaactgaat 139
>48349_bna-miR168:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cggcctctcattcgcttggtgcaggtcggga 31
|||||||| | ||||||||||||||||||||
Sbjct: 7 cggcctctgactcgcttggtgcaggtcggga 37
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 121 ttgggtcccgccttgcatcaactgaat 147
|||| ||||||||||||||||||||||
Sbjct: 92 ttggatcccgccttgcatcaactgaat 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 attcgcttggtgcaggtcggga 31
||||||||||||||||||||||
Sbjct: 11 attcgcttggtgcaggtcggga 32
>46957_ath-miR168a:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 121 ttgggtcccgccttgcatcaactgaat 147
|||| ||||||||||||||||||||||
Sbjct: 97 ttggatcccgccttgcatcaactgaat 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 attcgcttggtgcaggtcggga 31
||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcggga 37
>46958_ath-miR168b:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 attcgcttggtgcaggtcggga 31
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>54375_pts-miR168b:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 121 ttgggtcccgccttgcatcaactga 145
|||| ||||||||||||||||||||
Sbjct: 116 ttggatcccgccttgcatcaactga 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaggtcggga 31
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54374_pts-miR168a:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 121 ttgggtcccgccttgcatcaactga 145
|||| ||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaggtcggga 31
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54366_ptr-miR168:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 121 ttgggtcccgccttgcatcaactga 145
|||| ||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaggtcggga 31
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46959_ath-miR168m:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 121 ttgggtcccgccttgcatcaactga 145
|||| ||||||||||||||||||||
Sbjct: 80 ttggatcccgccttgcatcaactga 104
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaggtcggga 31
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>48649_hte-miR168:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcaggtcggga 31
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
