miRNEST 2.0, an integrative microRNA resource :: BLAST
>54665_stu-miR168:pmrd
Length = 133
Score = 172 bits (87), Expect = 5e-44
Identities = 126/136 (92%), Gaps = 6/136 (4%)
Strand = Plus / Plus
Query: 10 tcgcttggtgcaggtcgggacctacctcgccggca-caatggcggtagctgacggcgacg 68
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
Query: 69 ccagcgtaccggtaaaaac--taattttttacatgttgtctgtggcgtagtttgggtccc 126
|||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct: 61 gcagcttaccggtaaaaactttttttttttaca---tgtctgtggcgtagtttgggtccc 117
Query: 127 gccttgcatcaactga 142
||||||||||||||||
Sbjct: 118 gccttgcatcaactga 133
>51651_ptc-miR168b:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 118 ttgggtcccgccttgcatcaactgaataggaga 150
|||| |||||||||||||||||||||| |||||
Sbjct: 104 ttggatcccgccttgcatcaactgaatcggaga 136
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 ctctcattcgcttggtgcaggtcggga 29
|||| ||||||||||||||||||||||
Sbjct: 4 ctctaattcgcttggtgcaggtcggga 30
>54802_vvi-miR168:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 123 tcccgccttgcatcaactgaataggaga 150
|||||||||||||||||||||| |||||
Sbjct: 101 tcccgccttgcatcaactgaatcggaga 128
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 ctctcattcgcttggtgcaggtcggga 29
|||| ||||||||||||||||||||||
Sbjct: 4 ctctaattcgcttggtgcaggtcggga 30
>51650_ptc-miR168a:pmrd
Length = 160
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 118 ttgggtcccgccttgcatcaactgaataggag 149
|||| |||||||||||||||||||||| ||||
Sbjct: 128 ttggatcccgccttgcatcaactgaatcggag 159
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 ctctcattcgcttggtgcaggtcggga 29
|||| ||||||||||||||||||||||
Sbjct: 4 ctctgattcgcttggtgcaggtcggga 30
>48560_gma-miR168:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 118 ttgggtcccgccttgcatcaactgaataggag 149
|||| |||||||||||||||||||||| ||||
Sbjct: 82 ttggatcccgccttgcatcaactgaatcggag 113
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 ctctcattcgcttggtgcaggtcggga 29
|||| ||||||||||||||||||||||
Sbjct: 12 ctctaattcgcttggtgcaggtcggga 38
>54546_sly-miR168:pmrd
Length = 145
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tcgcttggtgcaggtcgggacct 32
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacct 23
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 117 tttgggtcccgccttgcatcaactga 142
||||||||| ||||||||||||||||
Sbjct: 120 tttgggtcctgccttgcatcaactga 145
>54388_rco-miR168:pmrd
Length = 156
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 ctctcattcgcttggtgcaggtcggga 29
|||| ||||||||||||||||||||||
Sbjct: 12 ctctaattcgcttggtgcaggtcggga 38
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 118 ttgggtcccgccttgcatcaactgaat 144
|||| ||||||||||||||||||||||
Sbjct: 113 ttggatcccgccttgcatcaactgaat 139
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 118 ttgggtcccgccttgcatcaactgaat 144
|||| ||||||||||||||||||||||
Sbjct: 92 ttggatcccgccttgcatcaactgaat 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 attcgcttggtgcaggtcggga 29
||||||||||||||||||||||
Sbjct: 11 attcgcttggtgcaggtcggga 32
>46957_ath-miR168a:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 118 ttgggtcccgccttgcatcaactgaat 144
|||| ||||||||||||||||||||||
Sbjct: 97 ttggatcccgccttgcatcaactgaat 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 attcgcttggtgcaggtcggga 29
||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcggga 37
>46958_ath-miR168b:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 attcgcttggtgcaggtcggga 29
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>54375_pts-miR168b:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 118 ttgggtcccgccttgcatcaactga 142
|||| ||||||||||||||||||||
Sbjct: 116 ttggatcccgccttgcatcaactga 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tcgcttggtgcaggtcggga 29
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54374_pts-miR168a:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 118 ttgggtcccgccttgcatcaactga 142
|||| ||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tcgcttggtgcaggtcggga 29
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54366_ptr-miR168:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 118 ttgggtcccgccttgcatcaactga 142
|||| ||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tcgcttggtgcaggtcggga 29
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>48349_bna-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gcctctcattcgcttggtgcaggtcggga 29
|||||| | ||||||||||||||||||||
Sbjct: 9 gcctctgactcgcttggtgcaggtcggga 37
>46959_ath-miR168m:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 118 ttgggtcccgccttgcatcaactga 142
|||| ||||||||||||||||||||
Sbjct: 80 ttggatcccgccttgcatcaactga 104
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tcgcttggtgcaggtcggga 29
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>48649_hte-miR168:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 tcgcttggtgcaggtcggga 29
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
