miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48560_gma-miR168:pmrd
          Length = 125

 Score =  172 bits (87), Expect = 6e-44
 Identities = 114/123 (92%)
 Strand = Plus / Plus

                                                                       
Query: 36  cactgtgcggtctctaattcgcttggtgcaggtcgggaaccggtttctgcgcgaaatggt 95
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||| 
Sbjct: 1   cactgtgcggtctctaattcgcttggtgcaggtcgggaaccggttttcgcgcggaatgga 60

                                                                       
Query: 96  gaagtggtagccggcggcgaattggatcccgccttgcatcaactgaatcggaggccgcag 155
           | || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 61  ggagcggtcgccggcgccgaattggatcccgccttgcatcaactgaatcggaggccgcgg 120

              
Query: 156 tga 158
           |||
Sbjct: 121 tga 123




>51650_ptc-miR168a:pmrd
          Length = 160

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 112 gcgaattggatcccgccttgcatcaactgaatcggagg 149
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gcgaattggatcccgccttgcatcaactgaatcggagg 160



 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 44 ggtctctaattcgcttggtgcaggtcgggaac 75
          ||||||| ||||||||||||||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaac 32




>51651_ptc-miR168b:pmrd
          Length = 136

 Score = 69.9 bits (35), Expect = 7e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 114 gaattggatcccgccttgcatcaactgaatcggag 148
           |||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggag 135



 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 44 ggtctctaattcgcttggtgcaggtcgggaac 75
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32




>54802_vvi-miR168:pmrd
          Length = 132

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 44 ggtctctaattcgcttggtgcaggtcgggaaccg 77
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaaccg 34



 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 120 gatcccgccttgcatcaactgaatcggag 148
           |||||||||||||||||||||||||||||
Sbjct: 99  gatcccgccttgcatcaactgaatcggag 127




>54388_rco-miR168:pmrd
          Length = 156

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 42 gcggtctctaattcgcttggtgcaggtcgggaac 75
          ||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40



 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 114 gaattggatcccgccttgcatcaactgaatcg 145
           ||||||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcg 141




>47339_ath-miRf10239-akr:pmrd
          Length = 129

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 116 attggatcccgccttgcatcaactgaatcgga 147
           ||||||||||||||||||||||||||||||||
Sbjct: 91  attggatcccgccttgcatcaactgaatcgga 122



 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 52 attcgcttggtgcaggtcgggaacc 76
          |||||||||||||||||||||||||
Sbjct: 11 attcgcttggtgcaggtcgggaacc 35




>46957_ath-miR168a:pmrd
          Length = 138

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 116 attggatcccgccttgcatcaactgaatcgga 147
           ||||||||||||||||||||||||||||||||
Sbjct: 96  attggatcccgccttgcatcaactgaatcgga 127



 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 52 attcgcttggtgcaggtcgggaacc 76
          |||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaacc 40




>54375_pts-miR168b:pmrd
          Length = 140

 Score = 60.0 bits (30), Expect = 7e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 112 gcgaattggatcccgccttgcatcaactga 141
           ||||||||||||||||||||||||||||||
Sbjct: 111 gcgaattggatcccgccttgcatcaactga 140



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 tcgcttggtgcaggtcgggaac 75
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>54374_pts-miR168a:pmrd
          Length = 118

 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 114 gaattggatcccgccttgcatcaactga 141
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 tcgcttggtgcaggtcgggaac 75
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>54366_ptr-miR168:pmrd
          Length = 118

 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 114 gaattggatcccgccttgcatcaactga 141
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 tcgcttggtgcaggtcgggaac 75
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>55000_zma-miR168b:pmrd
          Length = 104

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 119 ggatcccgccttgcatcaactgaatcggag 148
           ||||||||||||||||||| ||||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcggag 92




>46959_ath-miR168m:pmrd
          Length = 104

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 116 attggatcccgccttgcatcaactga 141
           ||||||||||||||||||||||||||
Sbjct: 79  attggatcccgccttgcatcaactga 104



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 54 tcgcttggtgcaggtcgggaacc 76
          |||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaacc 23




>46958_ath-miR168b:pmrd
          Length = 124

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 42 gcggtctctaattcgcttggtgcaggtcgggaac 75
          ||||||||  ||||||||||||||||||||||||
Sbjct: 7  gcggtctcggattcgcttggtgcaggtcgggaac 40




>54999_zma-miR168a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 119 ggatcccgccttgcatcaactgaatcggag 148
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>54637_sof-miR168b:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 119 ggatcccgccttgcatcaactgaatcggag 148
           ||||||||||||||| ||| ||||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcggag 91




>54636_sof-miR168a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 119 ggatcccgccttgcatcaactgaatcggag 148
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>48873_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 119 ggatcccgccttgcatcaactgaatcggag 148
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48872_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 119 ggatcccgccttgcatcaactgaatcggag 148
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48871_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 119 ggatcccgccttgcatcaactgaatcggag 148
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48649_hte-miR168:pmrd
          Length = 140

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 tcgcttggtgcaggtcgggaac 75
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>48349_bna-miR168:pmrd
          Length = 133

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 tcgcttggtgcaggtcgggaac 75
          ||||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcgggaac 39




>54665_stu-miR168:pmrd
          Length = 133

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 117 ttggatcccgccttgcatcaactga 141
           |||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tcgcttggtgcaggtcggga 73
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>54546_sly-miR168:pmrd
          Length = 145

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tcgcttggtgcaggtcggga 73
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20