miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54496_sbi-miR399h:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 84 ctgccaaaggagaattgccctgccattc 111
||||||||||||||||||||||||||||
Sbjct: 92 ctgccaaaggagaattgccctgccattc 119
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 84 ctgccaaaggagaattgccctgccattc 111
||||||||||||||||||||||||||||
Sbjct: 29 ctgccaaaggagaattgccctgccattc 2
>51753_ptc-miR399g:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 84 ctgccaaaggagaattgccctgccattc 111
||||||||||||||||||||||||||||
Sbjct: 64 ctgccaaaggagaattgccctgccattc 91
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 84 ctgccaaaggagaattgccctgccattc 111
||||||||||||||||||||||||||||
Sbjct: 78 ctgccaaaggagaattgccctgccattc 105
>55091_zma-miR399a:pmrd
Length = 123
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgccattc 111
|||||||||||||||||||||||||||
Sbjct: 84 tgccaaaggagaattgccctgccattc 110
>54884_vvi-miR399h:pmrd
Length = 90
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgccattc 111
|||||||||||||||||||||||||||
Sbjct: 60 tgccaaaggagaattgccctgccattc 86
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 85 tgccaaaggagaattgccctgccattc 111
|||||||||||||||||||||||||||
Sbjct: 27 tgccaaaggagaattgccctgccattc 1
>51752_ptc-miR399f:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgccattc 111
|||||||||||||||||||||||||||
Sbjct: 72 tgccaaaggagaattgccctgccattc 98
>48965_osa-miR399b:pmrd
Length = 97
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgccattc 111
|||||||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattc 93
>55093_zma-miR399c:pmrd
Length = 207
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgccattcta 113
|||||||||||||||||||||| ||||||
Sbjct: 168 tgccaaaggagaattgccctgcgattcta 196
>54877_vvi-miR399a:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 22 agaataacagtgtgattctcccttggcag 50
||||||||||||||||||||| |||||||
Sbjct: 2 agaataacagtgtgattctcctttggcag 30
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 tctgccaaaggagaattgccctg 105
|||||||||||||||||||||||
Sbjct: 65 tctgccaaaggagaattgccctg 87
>54491_sbi-miR399c:pmrd
Length = 130
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgccattcta 113
|||||||||||||||||||||| ||||||
Sbjct: 91 tgccaaaggagaattgccctgcgattcta 119
>54498_sbi-miR399j:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgcc 107
|||||||||||||||||||||||
Sbjct: 71 tgccaaaggagaattgccctgcc 93
>54489_sbi-miR399a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgccattc 111
|||||||||||||||||||||| ||||
Sbjct: 98 tgccaaaggagaattgccctgcgattc 124
>48966_osa-miR399c:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgccattc 111
|||||||||||||||||||||| ||||
Sbjct: 80 tgccaaaggagaattgccctgcgattc 106
>48964_osa-miR399a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgc 106
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
>48752_mtr-miR399c:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctgccatt 110
|||||||||||| |||||||||||||
Sbjct: 80 tgccaaaggagatttgccctgccatt 105
>55102_zma-miR399l:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctg 105
|||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctg 85
>55101_zma-miR399k:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 tgccaaaggagaattgccctg 105
|||||||||||||||||||||
Sbjct: 148 tgccaaaggagaattgccctg 168
>48316_bdi-miR399:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 84 ctgccaaaggagaattgccctgcca 108
|||||||||||||||| ||||||||
Sbjct: 72 ctgccaaaggagaattaccctgcca 96
>54490_sbi-miR399b:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 84 ctgccaaaggagaattgccctgccattc 111
||||||||||||| |||||||||||||
Sbjct: 83 ctgccaaaggagagctgccctgccattc 110
>48972_osa-miR399i:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 84 ctgccaaaggagaattgccctgccattc 111
||||||||||||| |||||||||||||
Sbjct: 85 ctgccaaaggagagctgccctgccattc 112
