miRNEST 2.0, an integrative microRNA resource :: BLAST
>54784_vvi-miR162:pmrd
Length = 103
Score = 101 bits (51), Expect = 1e-22
Identities = 92/103 (89%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 13 tgaagtcactggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacac 72
||||||||||||| ||||||||||||||||||||||||||| || | ||| ||| || |
Sbjct: 1 tgaagtcactggatgcagcggttcatcgatctcttcctgaaatt-gttgt-gaaaaaagc 58
Query: 73 aaagcaagaatcggtcgataaacctctgcatccagcgctcact 115
| | ||||||||||||||||||||||||||||||||| |||||
Sbjct: 59 agatcaagaatcggtcgataaacctctgcatccagcgttcact 101
>48423_cpa-miR162a:pmrd
Length = 109
Score = 99.6 bits (50), Expect = 5e-22
Identities = 87/97 (89%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 15 aagtcactggaggcagcggttcatcgatctcttcct--gaatttggctgtggaagaacac 72
|||||||||||||||||||||||||||||||||||| |||||||| |||| || | |||
Sbjct: 7 aagtcactggaggcagcggttcatcgatctcttcctgggaatttgg-tgtgaaaaatcac 65
Query: 73 aaagcaagaatcggtcgataaacctctgcatccagcg 109
| | || |||||| |||||||||||||||||||||||
Sbjct: 66 agaacatgaatcgatcgataaacctctgcatccagcg 102
>48493_ghr-miR162a:pmrd
Length = 148
Score = 89.7 bits (45), Expect = 5e-19
Identities = 86/96 (89%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctga--atttggctgtg-gaagaacacaaa 75
|||||||||||||||||||||||||||||||||| |||| | |||| ||| ||||||||
Sbjct: 22 cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaa 81
Query: 76 g-caagaatcggtcgataaacctctgcatccagcgc 110
|| |||||| ||||||||||||||||||||||||
Sbjct: 82 tacatgaatcgatcgataaacctctgcatccagcgc 117
>48545_gma-miR162a:pmrd
Length = 102
Score = 81.8 bits (41), Expect = 1e-16
Identities = 90/104 (86%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 12 gtgaagtcactggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaaca 71
|||||||||||||| ||||||||||||||||||||||||||| | | ||| || | ||
Sbjct: 1 gtgaagtcactggatgcagcggttcatcgatctcttcctgaa--tcgttgtttaacatca 58
Query: 72 caaagcaagaatcggtcgataaacctctgcatccagcgctcact 115
|| || |||||| |||||||||||||||||||||||||||||
Sbjct: 59 -gaaccatgaatcgatcgataaacctctgcatccagcgctcact 101
>48546_gma-miR162m:pmrd
Length = 367
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 87 tcgataaacctctgcatccagcgctcactttgcctctctt 126
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctcactttgcctctctt 40
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 73 aaagcaagaatcggtcgataaacctctgcatccagcgct 111
||||||||||||| |||||||||||||||||||||||||
Sbjct: 49 aaagcaagaatcgatcgataaacctctgcatccagcgct 11
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 12 gtgaagtcactggaggcagcggttcatcgatc 43
|||||||| |||||||||||||||||||||||
Sbjct: 111 gtgaagtcgctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 73 aaagcaagaatcggtcgataaacctctgcatccagcgct 111
||||||||||||| |||||||||||||||||||||||||
Sbjct: 65 aaagcaagaatcgatcgataaacctctgcatccagcgct 103
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 gtgaagtcactggaggcagcggttcatcgatc 43
|||||||| |||||||||||||||||||||||
Sbjct: 3 gtgaagtcgctggaggcagcggttcatcgatc 34
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctg 51
|||| |||||||||||||||||||||||||||||||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctg 65
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 87 tcgataaacctctgcatccagcgct 111
|||||||||||||||||||||||||
Sbjct: 28 tcgataaacctctgcatccagcgct 4
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctg 51
|||| |||||||||||||||||||||||||||||||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctg 65
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 87 tcgataaacctctgcatccagcgct 111
|||||||||||||||||||||||||
Sbjct: 28 tcgataaacctctgcatccagcgct 4
>51616_ptc-miR162a:pmrd
Length = 107
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctg 51
|||| |||||||||||||||||||||||||||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatctcttcctg 41
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 tcgataaacctctgcatccagcgct 111
|||||||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccagcgct 102
>54387_rco-miR162:pmrd
Length = 96
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
>48682_llu-miR162:pmrd
Length = 80
Score = 65.9 bits (33), Expect = 7e-12
Identities = 73/87 (83%), Gaps = 7/87 (8%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagcaag 80
||||| ||||||||| |||||||||||||||||||| || |||||||| || |
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctgaattt-------gattaacacaaaccatg 53
Query: 81 aatcggtcgataaacctctgcatccag 107
||||| |||||||||||||||||||||
Sbjct: 54 aatcgatcgataaacctctgcatccag 80
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
|||| |||||||||||||||||||||||||| ||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaa 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 87 tcgataaacctctgcatccag 107
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
|||| |||||||||||||||||||||||||| ||||||||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcctgaa 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 87 tcgataaacctctgcatccag 107
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
|||| |||||||||||||||||||||||||| ||||||||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcctgaa 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 87 tcgataaacctctgcatccag 107
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
|||| |||||||||||||||||||||||||| ||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaa 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 87 tcgataaacctctgcatccag 107
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
|||| |||||||||||||||||||||||||| ||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcctgaa 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 tcgataaacctctgcatccag 107
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 14 gaagtcactggaggcagcggttcatcgatctcttcctgaa 53
|||| |||||||||||||||||||||||||| ||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcctgaa 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 tcgataaacctctgcatccag 107
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>46937_ath-miR162a:pmrd
Length = 140
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 16 agtcactggaggcagcggttcatcgatctcttcctg 51
|||| |||||||||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 73 aaagcaagaatcggtcgataaacctctgcatccagcg 109
|||||| |||| | |||||||||||||||||||||||
Sbjct: 75 aaagcatgaatagatcgataaacctctgcatccagcg 111
>54948_zma-miR162b:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccag 107
||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccag 107
||||||||||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>48707_mtr-miR162d:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctgaattt 56
||||| |||||||||||||||||| |||||||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctgaattt 36
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccag 107
||||||||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
>48706_mtr-miR162c:pmrd
Length = 86
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 21 ctggaggcagcggttcatcgatctcttcctgaattt 56
||||| |||||||||||||||||| |||||||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctgaattt 51
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 80 gaatcggtcgataaacctctgcatcca 106
|||||||||||||||||||||||||||
Sbjct: 27 gaatcggtcgataaacctctgcatcca 1
>48685_lsa-miR162:pmrd
Length = 89
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 87 tcgataaacctctgcatccagcgctcac 114
||||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctcac 28
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 22 tggaggcagcggttcatcgatctcttcctgaattt 56
|||| |||||||||||||||||| |||||||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctgaattt 35
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatcca 106
|||||||||||||||||||||||||||
Sbjct: 59 gaatcggtcgataaacctctgcatcca 85
>48834_osa-miR162a:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccag 107
|||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48690_mdo-miR162:pmrd
Length = 88
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccag 107
|||||||||||||||||| |||||||||
Sbjct: 61 gaatcggtcgataaacctttgcatccag 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatct 44
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
>48835_osa-miR162b:pmrd
Length = 134
Score = 46.1 bits (23), Expect = 6e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 71 acaaagcaagaatcggtcgataaacctctgcatccagcgctcacttt 117
|||| ||| |||||| ||||||| ||||||||||||| ||||||||
Sbjct: 88 acaacgcaggaatcgatcgataagcctctgcatccagatctcacttt 134
>48836_osa-miR162m:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 71 acaaagcaagaatcggtcgataaacctctgcatccag 107
|||| ||| |||||| ||||||| |||||||||||||
Sbjct: 78 acaacgcaggaatcgatcgataagcctctgcatccag 114
