miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48507_ghr-miR396b:pmrd
          Length = 115

 Score =  228 bits (115), Expect = 1e-60
 Identities = 115/115 (100%)
 Strand = Plus / Plus

                                                                       
Query: 22  ttccacagctttcttgaactgcaatttcatgtaatcagatcattcattcattcgttgtcg 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttccacagctttcttgaactgcaatttcatgtaatcagatcattcattcattcgttgtcg 60

                                                                  
Query: 82  ttgatggtgctgcatatatacgagtacgttgttgcggttcaataaagctgtggga 136
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttgatggtgctgcatatatacgagtacgttgttgcggttcaataaagctgtggga 115




>48508_ghr-miR396c:pmrd
          Length = 115

 Score =  204 bits (103), Expect = 1e-53
 Identities = 112/115 (97%)
 Strand = Plus / Plus

                                                                       
Query: 22  ttccacagctttcttgaactgcaatttcatgtaatcagatcattcattcattcgttgtcg 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1   ttccacagctttcttgaactgcaatttcatgtaatcagatcattcattcattcattgtcg 60

                                                                  
Query: 82  ttgatggtgctgcatatatacgagtacgttgttgcggttcaataaagctgtggga 136
           ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttgatggtgttgcatacatacgagtacgttgttgcggttcaataaagctgtggga 115




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 75.8 bits (38), Expect = 9e-15
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                    
Query: 3  catggctctcttcgtattcttccacagctttcttgaactgca 44
          |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2  catggctctctttgtattcttccacagctttcttgaactgca 43



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 113 ttgcggttcaataaagctgtgggaagatacaaacagggtcaa 154
           ||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 98  ttgcggttcaataaagctgtgggaagatacagatagggtcaa 139




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 110 ttgttgcggttcaataaagctgtgggaagatacaa 144
           |||||||||||||||||||||||||||||||||||
Sbjct: 89  ttgttgcggttcaataaagctgtgggaagatacaa 123



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 16 gtattcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 112 gttgcggttcaataaagctgtgggaagatacaaacag 148
           ||||||||||||||||||||||||||||||| |||||
Sbjct: 84  gttgcggttcaataaagctgtgggaagataccaacag 120



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 16 gtattcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 113 ttgcggttcaataaagctgtgggaagatacaaacagggtca 153
           ||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 125 ttgcggttcaataaagctgtgggaagatacagacagagtca 165



 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 16 gtattcttccacagctttcttgaactgcaa 45
          ||||||||||||||||||||||||||||||
Sbjct: 12 gtattcttccacagctttcttgaactgcaa 41




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 114 tgcggttcaataaagctgtgggaagatacaa 144
           |||||||||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagatacaa 130



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 16 gtattcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||||||
Sbjct: 3  gtattcttccacagctttcttgaactgca 31




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 114 tgcggttcaataaagctgtgggaagatacaa 144
           |||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagatacaa 132



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 16 gtattcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33




>48680_lja-miR396:pmrd
          Length = 108

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 10 ctcttcgtattcttccacagctttcttgaactgca 44
          ||||| |||||||||||||||||||||||||||||
Sbjct: 4  ctctttgtattcttccacagctttcttgaactgca 38



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 113 ttgcggttcaataaagctgtgggaagata 141
           |||||||||||||||||||||||||||||
Sbjct: 71  ttgcggttcaataaagctgtgggaagata 99




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 113 ttgcggttcaataaagctgtgggaagataca 143
           |||||||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagataca 148



 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 16 gtattcttccacagctttcttgaactgcaa 45
          ||||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgcaa 34




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||
Sbjct: 2  tcttccacagctttcttgaactgca 26



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gttcaataaagctgtgggaa 137
           ||||||||||||||||||||
Sbjct: 95  gttcaataaagctgtgggaa 114




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||
Sbjct: 2  tcttccacagctttcttgaactgca 26



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gttcaataaagctgtgggaa 137
           ||||||||||||||||||||
Sbjct: 83  gttcaataaagctgtgggaa 102




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gttcaataaagctgtgggaa 137
           ||||||||||||||||||||
Sbjct: 99  gttcaataaagctgtgggaa 118




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gttcaataaagctgtgggaa 137
           ||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119




>54645_sof-miR396:pmrd
          Length = 134

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gttcaataaagctgtgggaa 137
           ||||||||||||||||||||
Sbjct: 97  gttcaataaagctgtgggaa 116




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gttcaataaagctgtgggaa 137
           ||||||||||||||||||||
Sbjct: 91  gttcaataaagctgtgggaa 110




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gttcaataaagctgtgggaa 137
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gttcaataaagctgtgggaa 137
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gttcaataaagctgtgggaa 137
           ||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 113 ttgcggttcaataaagctgtgggaa 137
           |||||||||||||||||||||||||
Sbjct: 97  ttgcggttcaataaagctgtgggaa 121



 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 ttccacagctttcttgaactgca 44
          |||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgca 23




>48486_gcl-miR396b:pmrd
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 113 ttgcggttcaataaagctgtggga 136
           ||||||||||||||||||||||||
Sbjct: 78  ttgcggttcaataaagctgtggga 101




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 113 ttgcggttcaataaagctgtggga 136
           ||||||||||||||||||||||||
Sbjct: 24  ttgcggttcaataaagctgtggga 1



 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 22  ttccacagctttcttgaactgca 44
           |||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgca 79




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 ttccacagctttcttgaactgca 44
          |||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgca 23




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 ttccacagctttcttgaactgca 44
          |||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgca 23




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 ttccacagctttcttgaactgca 44
          |||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgca 23




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tcttccacagctttcttgaactg 42
          |||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactg 31




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 ttccacagctttcttgaactgc 43
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgc 22




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 3  ttccacagctttcttgaact 22




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 3  ttccacagctttcttgaact 22




>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 22  ttccacagctttcttgaact 41
           ||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 22  ttccacagctttcttgaact 41
           ||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 22  ttccacagctttcttgaact 41
           ||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115




>51738_ptc-miR396e:pmrd
          Length = 145

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51564_pta-miR396:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48579_gma-miR396b:pmrd
          Length = 126

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>47009_ath-miR396b:pmrd
          Length = 135

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20