miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49004_osa-miR442:pmrd
Length = 233
Score = 234 bits (118), Expect = 2e-62
Identities = 142/150 (94%)
Strand = Plus / Plus
Query: 29 gtgtaaattgcgagacgaatcttttaaggctaattgcgccatgatttgacaatgtgttgc 88
|||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| |||
Sbjct: 56 gtgtaaattgcgagacgaatcttttaagcctaattgctccatgatctgacaatgtggtgc 115
Query: 89 tacagtaaacatttgctaatgacggattaattaagcttaataaatttgtctcgcagttta 148
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 116 tacagtaaacatttgctaatgacggattaattaggcttaataaattcgtctcgcagttta 175
Query: 149 caggcggattatgtaatttgttttgttatt 178
||| |||||| |||||||||||||||||||
Sbjct: 176 cagacggattctgtaatttgttttgttatt 205
>50895_osa-miRf11680-akr:pmrd
Length = 145
Score = 178 bits (90), Expect = 9e-46
Identities = 120/130 (92%)
Strand = Plus / Plus
Query: 29 gtgtaaattgcgagacgaatcttttaaggctaattgcgccatgatttgacaatgtgttgc 88
||||||||||||||||| |||||||||| |||||||| |||| ||||||||||||| |||
Sbjct: 11 gtgtaaattgcgagacggatcttttaagcctaattgcaccataatttgacaatgtggtgc 70
Query: 89 tacagtaaacatttgctaatgacggattaattaagcttaataaatttgtctcgcagttta 148
|| ||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||
Sbjct: 71 taaagtaaacatttgctaatgatggattaattaggcttaataaattcgtctcgcggttta 130
Query: 149 caggcggatt 158
||||||||||
Sbjct: 131 caggcggatt 140
>50149_osa-miRf10934-akr:pmrd
Length = 143
Score = 115 bits (58), Expect = 1e-26
Identities = 91/102 (89%)
Strand = Plus / Plus
Query: 33 aaattgcgagacgaatcttttaaggctaattgcgccatgatttgacaatgtgttgctaca 92
|||| ||||||||||||||||| | ||||||||||||| |||| ||||||| || ||||
Sbjct: 14 aaatcgcgagacgaatcttttaggcctaattgcgccataatttaacaatgttgtggtaca 73
Query: 93 gtaaacatttgctaatgacggattaattaagcttaataaatt 134
|||||||||||||||||||||||||||| |||| |||||||
Sbjct: 74 ataaacatttgctaatgacggattaattaggcttcataaatt 115
>49008_osa-miR445a:pmrd
Length = 268
Score = 109 bits (55), Expect = 7e-25
Identities = 94/107 (87%)
Strand = Plus / Minus
Query: 38 gcgagacgaatcttttaaggctaattgcgccatgatttgacaatgtgttgctacagtaaa 97
|||||||||||||||| || |||||| | |||||||||||||||||| ||||||||||||
Sbjct: 186 gcgagacgaatcttttgagtctaattacaccatgatttgacaatgtgatgctacagtaaa 127
Query: 98 catttgctaatgacggattaattaagcttaataaatttgtctcgcag 144
| ||| |||| | |||||||||| |||||| ||||| |||||||||
Sbjct: 126 cttttcataattatggattaattaggcttaaaaaattcgtctcgcag 80
>49010_osa-miR445c:pmrd
Length = 260
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 39 cgagacgaatcttttaaggctaattgcgccatgatt 74
|||||||||||||||||| |||||| | ||||||||
Sbjct: 173 cgagacgaatcttttaagcctaattacaccatgatt 138
>50021_osa-miRf10806-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 9e-06
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 97 acatttgctaatgacggattaattaagcttaataaatttgtctcgcagttt 147
|||| |||||||||||||||||||| ||| || | ||| ||||||| ||||
Sbjct: 53 acatgtgctaatgacggattaattaggctcaaaagattcgtctcgcggttt 3
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 33 aaattgcgagacgaatcttttaaggctaatt 63
|||| ||||||||||||||||||| ||||||
Sbjct: 121 aaatcgcgagacgaatcttttaagcctaatt 91
>49455_osa-miRf10240-akr:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 97 acatttgctaatgacggattaattaagcttaataaatttgtctcgcagtttacaggc 153
|||| ||||||| |||||||||||| ||| || | ||| ||||||| |||| |||||
Sbjct: 72 acatgtgctaataacggattaattaggctcaaaagattcgtctcgcggtttccaggc 128
>49015_osa-miR445h:pmrd
Length = 277
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 38 gcgagacgaatcttttaaggctaattgcgccatgatt 74
|||||||||||||||| || |||||| | ||||||||
Sbjct: 182 gcgagacgaatcttttgagtctaattacaccatgatt 146
>49013_osa-miR445f:pmrd
Length = 305
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 38 gcgagacgaatcttttaaggctaattgcgccatgatt 74
|||||||||||||||| || |||||| | ||||||||
Sbjct: 197 gcgagacgaatcttttgagtctaattacaccatgatt 161
>49012_osa-miR445e:pmrd
Length = 265
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 38 gcgagacgaatcttttaaggctaattgcgccatgatt 74
|||||||||||||||| || |||||| | ||||||||
Sbjct: 176 gcgagacgaatcttttgagtctaattacaccatgatt 140
>49009_osa-miR445b:pmrd
Length = 264
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 38 gcgagacgaatcttttaaggctaattgcgccatgatt 74
|||||||||||||||| || |||||| | ||||||||
Sbjct: 175 gcgagacgaatcttttgagtctaattacaccatgatt 139
>51304_osa-miRf12089-akr:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 6e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 33 aaattgcgagacgaatcttttaaggctaattgcgccatgatttg 76
|||| |||||||||||||||| || |||||| ||||||||||
Sbjct: 118 aaatcgcgagacgaatcttttgagtctaattagcccatgatttg 75
>51249_osa-miRf12034-akr:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 102 tgctaatgacggattaatta 121
||||||||||||||||||||
Sbjct: 74 tgctaatgacggattaatta 93
