miRNEST 2.0, an integrative microRNA resource :: BLAST
>54784_vvi-miR162:pmrd
Length = 103
Score = 77.8 bits (39), Expect = 2e-15
Identities = 90/105 (85%), Gaps = 4/105 (3%)
Strand = Plus / Plus
Query: 26 tgaagtcactggaggcaacggttcatcgatctcttcctgaatttggctgtggaatcatac 85
||||||||||||| ||| ||||||||||||||||||||||| ||| |||| || |
Sbjct: 1 tgaagtcactggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaaaaaag-- 57
Query: 86 acaaagcaagaatcggtcgataaacctctgcatccagcgctcact 130
|| | ||||||||||||||||||||||||||||||||| |||||
Sbjct: 58 -cagatcaagaatcggtcgataaacctctgcatccagcgttcact 101
>48546_gma-miR162m:pmrd
Length = 367
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 102 tcgataaacctctgcatccagcgctcactttgcctct 138
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctcactttgcctct 37
>48423_cpa-miR162a:pmrd
Length = 109
Score = 73.8 bits (37), Expect = 4e-14
Identities = 86/99 (86%), Gaps = 5/99 (5%)
Strand = Plus / Plus
Query: 28 aagtcactggaggcaacggttcatcgatctcttcct--gaatttggctgtggaatcatac 85
||||||||||||||| |||||||||||||||||||| |||||||| |||| || | |
Sbjct: 7 aagtcactggaggcagcggttcatcgatctcttcctgggaatttgg-tgtgaaa--aatc 63
Query: 86 acaaagcaagaatcggtcgataaacctctgcatccagcg 124
||| | || |||||| |||||||||||||||||||||||
Sbjct: 64 acagaacatgaatcgatcgataaacctctgcatccagcg 102
>48545_gma-miR162a:pmrd
Length = 102
Score = 69.9 bits (35), Expect = 6e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 25 gtgaagtcactggaggcaacggttcatcgatctcttcctgaat 67
|||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1 gtgaagtcactggatgcagcggttcatcgatctcttcctgaat 43
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 95 gaatcggtcgataaacctctgcatccagcgctcact 130
|||||| |||||||||||||||||||||||||||||
Sbjct: 66 gaatcgatcgataaacctctgcatccagcgctcact 101
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 88 aaagcaagaatcggtcgataaacctctgcatccagcgct 126
||||||||||||| |||||||||||||||||||||||||
Sbjct: 49 aaagcaagaatcgatcgataaacctctgcatccagcgct 11
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 25 gtgaagtcactggaggcaacggttcatcgatc 56
|||||||| ||||||||| |||||||||||||
Sbjct: 111 gtgaagtcgctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 88 aaagcaagaatcggtcgataaacctctgcatccagcgct 126
||||||||||||| |||||||||||||||||||||||||
Sbjct: 65 aaagcaagaatcgatcgataaacctctgcatccagcgct 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 25 gtgaagtcactggaggcaacggttcatcgatc 56
|||||||| ||||||||| |||||||||||||
Sbjct: 3 gtgaagtcgctggaggcagcggttcatcgatc 34
>48493_ghr-miR162a:pmrd
Length = 148
Score = 67.9 bits (34), Expect = 2e-12
Identities = 84/97 (86%), Gaps = 4/97 (4%)
Strand = Plus / Plus
Query: 32 cactggaggcaacggttcatcgatctcttcct--gaatttggctgtg-gaatcatacaca 88
||||||||||| |||||||||||||||||||| |||||| | |||| |||| | ||| |
Sbjct: 22 cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacaca-a 80
Query: 89 aagcaagaatcggtcgataaacctctgcatccagcgc 125
| || |||||| ||||||||||||||||||||||||
Sbjct: 81 atacatgaatcgatcgataaacctctgcatccagcgc 117
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 27 gaagtcactggaggcaacggttcatcgatctcttcctg 64
|||| ||||||||||| |||||||||||||||||||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctg 65
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 102 tcgataaacctctgcatccagcgct 126
|||||||||||||||||||||||||
Sbjct: 28 tcgataaacctctgcatccagcgct 4
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 27 gaagtcactggaggcaacggttcatcgatctcttcctg 64
|||| ||||||||||| |||||||||||||||||||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctg 65
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 102 tcgataaacctctgcatccagcgct 126
|||||||||||||||||||||||||
Sbjct: 28 tcgataaacctctgcatccagcgct 4
>51616_ptc-miR162a:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 27 gaagtcactggaggcaacggttcatcgatctcttcctg 64
|||| ||||||||||| |||||||||||||||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatctcttcctg 41
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 102 tcgataaacctctgcatccagcgct 126
|||||||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccagcgct 102
>54387_rco-miR162:pmrd
Length = 96
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 32 cactggaggcaacggttcatcgatctcttcctg 64
||||||||||| |||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 95 gaatcggtcgataaacctctgcatccagc 123
|||||| ||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccagc 96
>54948_zma-miR162b:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 gaatcggtcgataaacctctgcatccag 122
||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 gaatcggtcgataaacctctgcatccag 122
||||||||||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 27 gaagtcactggaggcaacggttcatcgatctcttcctgaa 66
|||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaa 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 102 tcgataaacctctgcatccag 122
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 27 gaagtcactggaggcaacggttcatcgatctcttcctgaa 66
|||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcctgaa 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 102 tcgataaacctctgcatccag 122
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 27 gaagtcactggaggcaacggttcatcgatctcttcctgaa 66
|||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcctgaa 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 102 tcgataaacctctgcatccag 122
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 27 gaagtcactggaggcaacggttcatcgatctcttcctgaa 66
|||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaa 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 102 tcgataaacctctgcatccag 122
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 27 gaagtcactggaggcaacggttcatcgatctcttcctgaa 66
|||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcctgaa 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 102 tcgataaacctctgcatccag 122
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 27 gaagtcactggaggcaacggttcatcgatctcttcctgaa 66
|||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcctgaa 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 102 tcgataaacctctgcatccag 122
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>48707_mtr-miR162d:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 gaatcggtcgataaacctctgcatccag 122
||||||||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 34 ctggaggcaacggttcatcgatctcttcctgaattt 69
||||| ||| |||||||||||||| |||||||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctgaattt 36
>48685_lsa-miR162:pmrd
Length = 89
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 102 tcgataaacctctgcatccagcgctcac 129
||||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctcac 28
>46937_ath-miR162a:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 29 agtcactggaggcaacggttcatcgatctcttcctg 64
|||| ||||||||| |||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 88 aaagcaagaatcggtcgataaacctctgcatccagcg 124
|||||| |||| | |||||||||||||||||||||||
Sbjct: 75 aaagcatgaatagatcgataaacctctgcatccagcg 111
>48706_mtr-miR162c:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 95 gaatcggtcgataaacctctgcatcca 121
|||||||||||||||||||||||||||
Sbjct: 27 gaatcggtcgataaacctctgcatcca 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 34 ctggaggcaacggttcatcgatctcttcctgaattt 69
||||| ||| |||||||||||||| |||||||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctgaattt 51
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 95 gaatcggtcgataaacctctgcatcca 121
|||||||||||||||||||||||||||
Sbjct: 59 gaatcggtcgataaacctctgcatcca 85
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 35 tggaggcaacggttcatcgatctcttcctgaattt 69
|||| ||| |||||||||||||| |||||||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctgaattt 35
>48682_llu-miR162:pmrd
Length = 80
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 84 acacaaagcaagaatcggtcgataaacctctgcatccag 122
||||||| || |||||| |||||||||||||||||||||
Sbjct: 42 acacaaaccatgaatcgatcgataaacctctgcatccag 80
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 34 ctggaggcaacggttcatcgatctcttcctgaatttg 70
||||| ||| ||||| |||||||||||||||||||||
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctgaatttg 37
>48834_osa-miR162a:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 gaatcggtcgataaacctctgcatccag 122
|||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48690_mdo-miR162:pmrd
Length = 88
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 gaatcggtcgataaacctctgcatccag 122
|||||||||||||||||| |||||||||
Sbjct: 61 gaatcggtcgataaacctttgcatccag 88
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 34 ctggaggcaacggttcatcgatct 57
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
>48835_osa-miR162b:pmrd
Length = 134
Score = 46.1 bits (23), Expect = 8e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 86 acaaagcaagaatcggtcgataaacctctgcatccagcgctcacttt 132
|||| ||| |||||| ||||||| ||||||||||||| ||||||||
Sbjct: 88 acaacgcaggaatcgatcgataagcctctgcatccagatctcacttt 134
>48836_osa-miR162m:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 86 acaaagcaagaatcggtcgataaacctctgcatccag 122
|||| ||| |||||| ||||||| |||||||||||||
Sbjct: 78 acaacgcaggaatcgatcgataagcctctgcatccag 114
