miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 93  tttgcggttcaataaagctgtgggaagatagagacaga 130
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 124 tttgcggttcaataaagctgtgggaagatacagacaga 161



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 25 tattcttccacggctttcttgaactgca 52
          ||||||||||| ||||||||||||||||
Sbjct: 13 tattcttccacagctttcttgaactgca 40




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 93  tttgcggttcaataaagctgtgggaagatagagac 127
           |||||||||||||||||||||||||||||| ||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagatacagac 151



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 25 tattcttccacggctttcttgaactgca 52
          ||||||||||| ||||||||||||||||
Sbjct: 6  tattcttccacagctttcttgaactgca 33




>48680_lja-miR396:pmrd
          Length = 108

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 93  tttgcggttcaataaagctgtgggaagata 122
           ||||||||||||||||||||||||||||||
Sbjct: 70  tttgcggttcaataaagctgtgggaagata 99



 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 18 ctctttctattcttccacggctttcttgaactgcat 53
          |||||| ||||||||||| |||||||||||||||||
Sbjct: 4  ctctttgtattcttccacagctttcttgaactgcat 39




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                    
Query: 12 atggttctctttctattcttccacggctttcttgaactgcat 53
          |||| ||||||| ||||||||||| |||||||||||||||||
Sbjct: 3  atggctctctttgtattcttccacagctttcttgaactgcat 44



 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 93  tttgcggttcaataaagctgtgggaagata 122
           ||||||||||||||||||||||||||||||
Sbjct: 97  tttgcggttcaataaagctgtgggaagata 126




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 94  ttgcggttcaataaagctgtgggaagata 122
           |||||||||||||||||||||||||||||
Sbjct: 85  ttgcggttcaataaagctgtgggaagata 113



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 20 ctttctattcttccacggctttcttgaactgcat 53
          |||| ||||||||||| |||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 94  ttgcggttcaataaagctgtgggaagata 122
           |||||||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtgggaagata 120



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 25 tattcttccacggctttcttgaactgca 52
          ||||||||||| ||||||||||||||||
Sbjct: 6  tattcttccacagctttcttgaactgca 33




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 95  tgcggttcaataaagctgtgggaagata 122
           ||||||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagata 127



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 25 tattcttccacggctttcttgaactgca 52
          ||||||||||| ||||||||||||||||
Sbjct: 4  tattcttccacagctttcttgaactgca 31




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 95  tgcggttcaataaagctgtgggaagata 122
           ||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagata 129



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 20 ctttctattcttccacggctttcttgaactgca 52
          |||| ||||||||||| ||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgca 33




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 92  ctttgcggttcaataaagctgtgggaa 118
           |||||||||||||||||||||||||||
Sbjct: 95  ctttgcggttcaataaagctgtgggaa 121



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 30 ttccacggctttcttgaactgcatgg 55
          |||||| |||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatgg 26




>48486_gcl-miR396b:pmrd
          Length = 101

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 93  tttgcggttcaataaagctgtggga 117
           |||||||||||||||||||||||||
Sbjct: 77  tttgcggttcaataaagctgtggga 101




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 93  tttgcggttcaataaagctgtggga 117
           |||||||||||||||||||||||||
Sbjct: 25  tttgcggttcaataaagctgtggga 1



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 30  ttccacggctttcttgaactgcat 53
           |||||| |||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcat 78




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 94  ttgcggttcaataaagctgtggga 117
           ||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtggga 115




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 94  ttgcggttcaataaagctgtggga 117
           ||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtggga 115




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 28 tcttccacggctttcttgaactgcatg 54
          |||||||| ||||||||||||||||||
Sbjct: 2  tcttccacagctttcttgaactgcatg 28



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gttcaataaagctgtgggaa 118
           ||||||||||||||||||||
Sbjct: 83  gttcaataaagctgtgggaa 102




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 28 tcttccacggctttcttgaactgcatg 54
          |||||||| ||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatg 45



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gttcaataaagctgtgggaa 118
           ||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 28 tcttccacggctttcttgaactgcatg 54
          |||||||| ||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatg 45



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gttcaataaagctgtgggaa 118
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 28 tcttccacggctttcttgaactgcat 53
          |||||||| |||||||||||||||||
Sbjct: 2  tcttccacagctttcttgaactgcat 27



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gttcaataaagctgtgggaa 118
           ||||||||||||||||||||
Sbjct: 95  gttcaataaagctgtgggaa 114




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 28 tcttccacggctttcttgaactgcat 53
          |||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gttcaataaagctgtgggaa 118
           ||||||||||||||||||||
Sbjct: 99  gttcaataaagctgtgggaa 118




>54645_sof-miR396:pmrd
          Length = 134

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 28 tcttccacggctttcttgaactgcat 53
          |||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gttcaataaagctgtgggaa 118
           ||||||||||||||||||||
Sbjct: 97  gttcaataaagctgtgggaa 116




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 28 tcttccacggctttcttgaactgcat 53
          |||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gttcaataaagctgtgggaa 118
           ||||||||||||||||||||
Sbjct: 91  gttcaataaagctgtgggaa 110




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 28 tcttccacggctttcttgaactgcat 53
          |||||||| |||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcat 34



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gttcaataaagctgtgggaa 118
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 30 ttccacggctttcttgaactgcatg 54
          |||||| ||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatg 25




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 30 ttccacggctttcttgaactgcatg 54
          |||||| ||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatg 25




>52919_ptc-miRf11097-akr:pmrd
          Length = 115

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 30  ttccacggctttcttgaactg 50
           |||||||||||||||||||||
Sbjct: 112 ttccacggctttcttgaactg 92




>51739_ptc-miR396f:pmrd
          Length = 127

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 ttccacggctttcttgaactg 50
          |||||||||||||||||||||
Sbjct: 11 ttccacggctttcttgaactg 31




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 28 tcttccacggctttcttgaactgca 52
          |||||||| ||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gttcaataaagctgtgggaa 118
           ||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 30 ttccacggctttcttgaactgcat 53
          |||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>52339_ptc-miRf10517-akr:pmrd
          Length = 164

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacggctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 8  ttccacggctttcttgaact 27




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacggctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 10 ttccacggctttcttgaact 29




>51740_ptc-miR396g:pmrd
          Length = 168

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacggctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacggctttcttgaact 30




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 30 ttccacggctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 94 ttccacggctttcttgaact 75