miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54839_vvi-miR172c:pmrd
Length = 138
Score = 272 bits (137), Expect = 6e-74
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 1 ttattgccgctgcagcatcatcaagattcccacatcaaagagccatcggagtgtaggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ttattgccgctgcagcatcatcaagattcccacatcaaagagccatcggagtgtaggaag 78
Query: 61 ggaccacaaaagtcaccatcaccaccacgcactgagtctcaatacttgtgaatcttgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 ggaccacaaaagtcaccatcaccaccacgcactgagtctcaatacttgtgaatcttgatg 18
Query: 121 atgctccatccgcaaac 137
|||||||||||||||||
Sbjct: 17 atgctccatccgcaaac 1
>51704_ptc-miR172g:pmrd
Length = 143
Score = 71.9 bits (36), Expect = 1e-13
Identities = 113/134 (84%), Gaps = 6/134 (4%)
Strand = Plus / Minus
Query: 1 ttattgccgctgcagcatcatcaagattcccacatcaaagagccatcggagtg-taggaa 59
|||||||||||||||||||||||||||||||| |||||| || || ||| || | ||
Sbjct: 143 ttattgccgctgcagcatcatcaagattcccaattcaaagggctattggattgaaaaaaa 84
Query: 60 gggacca-caaaagtcaccatcaccaccacgcactgagtctcaata---cttgtgaatct 115
||||||| |||||| |||||||| |||||| |||| || | |||| |||||||||||
Sbjct: 83 gggaccaccaaaagccaccatcatcaccacacact-agccctaataaagcttgtgaatct 25
Query: 116 tgatgatgctccat 129
||||||||||||||
Sbjct: 24 tgatgatgctccat 11
>53842_ptc-miRf12020-akr:pmrd
Length = 136
Score = 65.9 bits (33), Expect = 7e-12
Identities = 110/131 (83%), Gaps = 6/131 (4%)
Strand = Plus / Minus
Query: 4 ttgccgctgcagcatcatcaagattcccacatcaaagagccatcggagtg-taggaaggg 62
||||||||||||||||||||||||||||| |||||| || || ||| || | |||||
Sbjct: 136 ttgccgctgcagcatcatcaagattcccaattcaaagggctattggattgaaaaaaaggg 77
Query: 63 acca-caaaagtcaccatcaccaccacgcactgagtctcaata---cttgtgaatcttga 118
|||| |||||| |||||||| |||||| |||| || | |||| ||||||||||||||
Sbjct: 76 accaccaaaagccaccatcatcaccacacact-agccctaataaagcttgtgaatcttga 18
Query: 119 tgatgctccat 129
|||||||||||
Sbjct: 17 tgatgctccat 7
>52375_ptc-miRf10553-akr:pmrd
Length = 136
Score = 65.9 bits (33), Expect = 7e-12
Identities = 110/131 (83%), Gaps = 6/131 (4%)
Strand = Plus / Minus
Query: 4 ttgccgctgcagcatcatcaagattcccacatcaaagagccatcggagtg-taggaaggg 62
||||||||||||||||||||||||||||| |||||| || || ||| || | |||||
Sbjct: 136 ttgccgctgcagcatcatcaagattcccaattcaaagggctattggattgaaaaaaaggg 77
Query: 63 acca-caaaagtcaccatcaccaccacgcactgagtctcaata---cttgtgaatcttga 118
|||| |||||| |||||||| |||||| |||| || | |||| ||||||||||||||
Sbjct: 76 accaccaaaagccaccatcatcaccacacact-agccctaataaagcttgtgaatcttga 18
Query: 119 tgatgctccat 129
|||||||||||
Sbjct: 17 tgatgctccat 7
>51948_ptc-miRf10126-akr:pmrd
Length = 152
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1 ttattgccgctgcagcatcatcaagattccca 32
||||||||||||||||||||||||||||||||
Sbjct: 147 ttattgccgctgcagcatcatcaagattccca 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 106 ttgtgaatcttgatgatgctccatccgcaaac 137
||||||||||||||| ||||||||| ||||||
Sbjct: 38 ttgtgaatcttgatggtgctccatcggcaaac 7
>51705_ptc-miR172h:pmrd
Length = 143
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1 ttattgccgctgcagcatcatcaagattccca 32
||||||||||||||||||||||||||||||||
Sbjct: 143 ttattgccgctgcagcatcatcaagattccca 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 106 ttgtgaatcttgatgatgctccatccgcaaac 137
||||||||||||||| ||||||||| ||||||
Sbjct: 34 ttgtgaatcttgatggtgctccatcggcaaac 3
>51903_ptc-miRf10081-akr:pmrd
Length = 147
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 107 tgtgaatcttgatgatgctccatccgcaaac 137
|||||||||||||||||||||| ||||||||
Sbjct: 36 tgtgaatcttgatgatgctccacccgcaaac 6
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 ttattgccgctgcagcatcatcaagattc 29
||||||||| |||||||||||||||||||
Sbjct: 143 ttattgccgatgcagcatcatcaagattc 115
>51699_ptc-miR172b:pmrd
Length = 140
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 107 tgtgaatcttgatgatgctccatccgcaaac 137
|||||||||||||||||||||| ||||||||
Sbjct: 33 tgtgaatcttgatgatgctccacccgcaaac 3
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 ttattgccgctgcagcatcatcaagattc 29
||||||||| |||||||||||||||||||
Sbjct: 140 ttattgccgatgcagcatcatcaagattc 112
>51344_ppd-miR172b:pmrd
Length = 139
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 107 tgtgaatcttgatgatgctccatccgcaaac 137
|||||||||||||||||||||| ||||||||
Sbjct: 107 tgtgaatcttgatgatgctccacccgcaaac 137
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 tattgccgctgcagcatcatcaagattc 29
|||||||| |||||||||||||||||||
Sbjct: 1 tattgccgatgcagcatcatcaagattc 28
>51343_ppd-miR172a:pmrd
Length = 139
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 107 tgtgaatcttgatgatgctccatccgcaaac 137
|||||||||||||||||||||| ||||||||
Sbjct: 31 tgtgaatcttgatgatgctccacccgcaaac 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 ttattgccgctgcagcatcatcaagattc 29
||||||||| |||||||||||||||||||
Sbjct: 138 ttattgccgatgcagcatcatcaagattc 110
>48571_gma-miR172b:pmrd
Length = 153
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 107 tgtgaatcttgatgatgctccatccgcaaac 137
||||||||||||||||||| |||||||||||
Sbjct: 43 tgtgaatcttgatgatgctacatccgcaaac 13
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 11 tgcagcatcatcaagattcccacatcaaa 39
||||||||||||||||||| |||||||||
Sbjct: 133 tgcagcatcatcaagattctcacatcaaa 105
>46987_ath-miR172d:pmrd
Length = 124
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 3 attgccgctgcagcatcatcaagattc 29
|||||||||||||||||||||||||||
Sbjct: 115 attgccgctgcagcatcatcaagattc 89
>48570_gma-miR172a:pmrd
Length = 159
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 107 tgtgaatcttgatgatgctccatccgcaaa 136
||||||||||||||||||| ||||||||||
Sbjct: 43 tgtgaatcttgatgatgctacatccgcaaa 14
>53739_ptc-miRf11917-akr:pmrd
Length = 143
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 4 ttgccgctgcagcatcatcaagattccca 32
|||||| ||||||||||||||||||||||
Sbjct: 134 ttgccgatgcagcatcatcaagattccca 106
>52845_ptc-miRf11023-akr:pmrd
Length = 133
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 107 tgtgaatcttgatgatgctccatccgcaa 135
|||||||||||||||||||||| ||||||
Sbjct: 29 tgtgaatcttgatgatgctccacccgcaa 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 ttgccgctgcagcatcatcaagattc 29
|||||| |||||||||||||||||||
Sbjct: 133 ttgccgatgcagcatcatcaagattc 108
>52835_ptc-miRf11013-akr:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 ttgccgctgcagcatcatcaagattccca 32
|||||| ||||||||||||||||||||||
Sbjct: 6 ttgccgatgcagcatcatcaagattccca 34
>52315_ptc-miRf10493-akr:pmrd
Length = 141
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 4 ttgccgctgcagcatcatcaagattccca 32
|||||| ||||||||||||||||||||||
Sbjct: 133 ttgccgatgcagcatcatcaagattccca 105
>51901_ptc-miRf10079-akr:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 ttgccgctgcagcatcatcaagattccca 32
|||||| ||||||||||||||||||||||
Sbjct: 4 ttgccgatgcagcatcatcaagattccca 32
>51703_ptc-miR172f:pmrd
Length = 161
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 ttattgccgctgcagcatcatcaagattc 29
||||||||| |||||||||||||||||||
Sbjct: 161 ttattgccgatgcagcatcatcaagattc 133
>51702_ptc-miR172e:pmrd
Length = 133
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 4 ttgccgctgcagcatcatcaagattccca 32
|||||| ||||||||||||||||||||||
Sbjct: 130 ttgccgatgcagcatcatcaagattccca 102
>51701_ptc-miR172d:pmrd
Length = 182
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 4 ttgccgctgcagcatcatcaagattccca 32
|||||| ||||||||||||||||||||||
Sbjct: 179 ttgccgatgcagcatcatcaagattccca 151
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 105 cttgtgaatcttgatgatgctccatccgc 133
|||||||||||||||||||| |||||||
Sbjct: 35 cttgtgaatcttgatgatgccgcatccgc 7
>55045_zma-miR172f:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 tgcagcatcatcaagattcccaca 34
||||||||||||||||||||||||
Sbjct: 134 tgcagcatcatcaagattcccaca 111
>55044_zma-miR172e:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 tgcagcatcatcaagattcccaca 34
||||||||||||||||||||||||
Sbjct: 154 tgcagcatcatcaagattcccaca 131
>54838_vvi-miR172b:pmrd
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 tattgccgctgcagcatcatcaagattc 29
|||||||| |||||||||||||||||||
Sbjct: 1 tattgccgatgcagcatcatcaagattc 28
>54837_vvi-miR172a:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 tattgccgctgcagcatcatcaagattc 29
|||||||| |||||||||||||||||||
Sbjct: 1 tattgccgatgcagcatcatcaagattc 28
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 107 tgtgaatcttgatgatgctccatccgcaaac 137
||||||||||||||||||| ||| |||||||
Sbjct: 78 tgtgaatcttgatgatgctacatgcgcaaac 108
>54464_sbi-miR172b:pmrd
Length = 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 tgcagcatcatcaagattcccaca 34
||||||||||||||||||||||||
Sbjct: 169 tgcagcatcatcaagattcccaca 146
>48907_osa-miR172b:pmrd
Length = 238
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 tgcagcatcatcaagattcccaca 34
||||||||||||||||||||||||
Sbjct: 227 tgcagcatcatcaagattcccaca 204
>48151_ath-miRf11051-akr:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 106 ttgtgaatcttgatgatgctcca 128
|||||||||||||||||||||||
Sbjct: 39 ttgtgaatcttgatgatgctcca 17
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3 attgccgctgcagcatcatcaagattc 29
||||| |||||||||||||||||||||
Sbjct: 125 attgcagctgcagcatcatcaagattc 99
>48133_ath-miRf11033-akr:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3 attgccgctgcagcatcatcaagattc 29
||||||| |||||||||||||||||||
Sbjct: 114 attgccgatgcagcatcatcaagattc 88
>47855_ath-miRf10755-akr:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 attgccgctgcagcatcatcaagattc 29
||||| |||||||||||||||||||||
Sbjct: 9 attgcagctgcagcatcatcaagattc 35
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 106 ttgtgaatcttgatgatgctcca 128
|||||||||||||||||||||||
Sbjct: 95 ttgtgaatcttgatgatgctcca 117
>47734_ath-miRf10634-akr:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcagcatcatcaagattcccac 33
|||||||||||||||||||||||
Sbjct: 19 tgcagcatcatcaagattcccac 41
>47545_ath-miRf10445-akr:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 106 ttgtgaatcttgatgatgctcca 128
|||||||||||||||||||||||
Sbjct: 38 ttgtgaatcttgatgatgctcca 16
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3 attgccgctgcagcatcatcaagattc 29
||||| |||||||||||||||||||||
Sbjct: 124 attgcagctgcagcatcatcaagattc 98
>47531_ath-miRf10431-akr:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3 attgccgctgcagcatcatcaagattc 29
||||||| |||||||||||||||||||
Sbjct: 118 attgccgatgcagcatcatcaagattc 92
>46988_ath-miR172e:pmrd
Length = 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tgcagcatcatcaagattcccac 33
|||||||||||||||||||||||
Sbjct: 114 tgcagcatcatcaagattcccac 92
>46986_ath-miR172c:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 106 ttgtgaatcttgatgatgctcca 128
|||||||||||||||||||||||
Sbjct: 39 ttgtgaatcttgatgatgctcca 17
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3 attgccgctgcagcatcatcaagattc 29
||||| |||||||||||||||||||||
Sbjct: 125 attgcagctgcagcatcatcaagattc 99
>48693_mes-miR172:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 ttgccgctgcagcatcatcaagattc 29
|||||| |||||||||||||||||||
Sbjct: 142 ttgccgatgcagcatcatcaagattc 117
>46883_aqc-miR172b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 tgcagcatcatcaagattccca 32
||||||||||||||||||||||
Sbjct: 105 tgcagcatcatcaagattccca 84
>48906_osa-miR172a:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctccatccgca 134
|||||||||||||||| ||||||||
Sbjct: 80 gaatcttgatgatgctgcatccgca 104
>54840_vvi-miR172d:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 107 tgtgaatcttgatgatgctccatc 130
||||||||||||||||||| ||||
Sbjct: 31 tgtgaatcttgatgatgctgcatc 8
>54467_sbi-miR172e:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 11 tgcagcatcatcaagattcccaca 34
||||||||||||||||||| ||||
Sbjct: 95 tgcagcatcatcaagattcacaca 72
>54466_sbi-miR172d:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctccatccgcaaac 137
|||||||||||||||| |||| ||||||
Sbjct: 74 gaatcttgatgatgctgcatcagcaaac 101
>49516_osa-miRf10301-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctccatccgcaaac 137
|||||||||||||||| |||| ||||||
Sbjct: 88 gaatcttgatgatgctgcatcagcaaac 115
>48909_osa-miR172d:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctccatccgcaaac 137
|||||||||||||||| |||| ||||||
Sbjct: 92 gaatcttgatgatgctgcatcagcaaac 119
>46983_ath-miR172a:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 6 gccgctgcagcatcatcaagattc 29
|||| |||||||||||||||||||
Sbjct: 102 gccgatgcagcatcatcaagattc 79
