miRNEST 2.0, an integrative microRNA resource :: BLAST
>54869_vvi-miR396b:pmrd
Length = 108
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 12 tcctgccatgcttttccacagctttcttgaacttcttctccctgtttggtggtctcctac 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcctgccatgcttttccacagctttcttgaacttcttctccctgtttggtggtctcctac 60
Query: 72 gtttacccatccactgaagttcaagaaagctgtgggaaaccatggctt 119
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtttacccatccactgaagttcaagaaagctgtgggaaaccatggctt 108
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgggaaaccatggc 117
|||||||||||||||||||| ||| ||||||
Sbjct: 35 gaagttcaagaaagctgtggaaaagcatggc 5
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 16 gccatgcttttccacagctttcttgaacttc 46
|||||| ||| ||||||||||||||||||||
Sbjct: 106 gccatggtttcccacagctttcttgaacttc 76
>48580_gma-miR396c:pmrd
Length = 117
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 8 caagtcctgccatgcttttccacagctttcttgaacttctt 48
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4 caagtcctgttatgcttttccacagctttcttgaacttctt 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgg 106
||||||||||||||||||||
Sbjct: 42 gaagttcaagaaagctgtgg 23
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 18 catgcttttccacagctttcttgaacttctt 48
|||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 87 gaagttcaagaaagctgtgggaaaccatg 115
|||||||||||||||||||| ||| ||||
Sbjct: 113 gaagttcaagaaagctgtggaaaagcatg 141
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 18 catgcttttccacagctttcttgaacttctt 48
|||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 87 gaagttcaagaaagctgtgggaaaccatg 115
|||||||||||||||||||| ||| ||||
Sbjct: 113 gaagttcaagaaagctgtggaaaagcatg 141
>51738_ptc-miR396e:pmrd
Length = 145
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 18 catgcttttccacagctttcttgaacttctt 48
|||||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttctt 34
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgggaaaccatg 115
|||||||||||||||||||| ||| ||||
Sbjct: 32 gaagttcaagaaagctgtggaaaagcatg 4
>48579_gma-miR396b:pmrd
Length = 126
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 18 catgcttttccacagctttcttgaacttctt 48
|||||||||||||||||||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaacttctt 44
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgggaaaccatg 115
|||||||||||||||||||| ||| ||||
Sbjct: 42 gaagttcaagaaagctgtggaaaagcatg 14
>54487_sbi-miR396c:pmrd
Length = 162
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 15 tgccatgcttttccacagctttcttgaacttcttctcc 52
|||||||| |||||||||||||||||||||||| ||||
Sbjct: 11 tgccatgcctttccacagctttcttgaacttctcctcc 48
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgg 106
||||||||||||||||||||
Sbjct: 42 gaagttcaagaaagctgtgg 23
>54868_vvi-miR396a:pmrd
Length = 116
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 12 tcctgccatgcttttccacagctttcttgaact 44
||||| |||||||||||||||||||||||||||
Sbjct: 1 tcctgtcatgcttttccacagctttcttgaact 33
>51737_ptc-miR396d:pmrd
Length = 154
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 catgcttttccacagctttcttgaacttc 46
|||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttc 32
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgggaaaccatg 115
|||||||||||||||||||| ||| ||||
Sbjct: 32 gaagttcaagaaagctgtggaaaagcatg 4
>48947_osa-miR396c:pmrd
Length = 141
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 15 tgccatgcttttccacagctttcttgaacttct 47
|||||||| ||||||||||||||||||||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaacttct 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgg 106
||||||||||||||||||||
Sbjct: 32 gaagttcaagaaagctgtgg 13
>48748_mtr-miR396a:pmrd
Length = 93
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 tgcttttccacagctttcttgaacttctt 48
|||||||||||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaacttctt 29
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgg 106
||||||||||||||||||||
Sbjct: 27 gaagttcaagaaagctgtgg 8
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 19 atgcttttccacagctttcttgaacttc 46
||||||||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaacttc 121
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gaagttcaagaaagctgtgg 106
||||||||||||||||||||
Sbjct: 121 gaagttcaagaaagctgtgg 140
>51736_ptc-miR396c:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 15 tgccatgcttttccacagctttcttgaacttc 46
||||||| ||||||||||||||||||||||||
Sbjct: 1 tgccatgtttttccacagctttcttgaacttc 32
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgggaaaccatggc 117
|||||||||||||||||||| ||| ||||||
Sbjct: 32 gaagttcaagaaagctgtggaaaaacatggc 2
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 18 catgcttttccacagctttcttgaacttctt 48
|||||| |||||| |||||||||||||||||
Sbjct: 101 catgctattccacggctttcttgaacttctt 71
>55078_zma-miR396g:pmrd
Length = 117
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 tttccacagctttcttgaacttcttct 50
|||||||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaacttcttct 28
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgg 106
||||||||||||||||||||
Sbjct: 24 gaagttcaagaaagctgtgg 5
>55077_zma-miR396f:pmrd
Length = 166
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 tttccacagctttcttgaacttcttct 50
|||||||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaacttcttct 28
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 87 gaagttcaagaaagctgtgg 106
||||||||||||||||||||
Sbjct: 24 gaagttcaagaaagctgtgg 5
>54584_smo-miR396:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 87 gaagttcaagaaagctgtgggaaaccatggc 117
||||||||||||||||||||||||| |||||
Sbjct: 134 gaagttcaagaaagctgtgggaaacaatggc 164
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 catgcttttccacagctttcttgaac 43
||||||||||||| ||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaac 29
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 27 ccacagctttcttgaacttc 46
||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 16 gccatgcttttccacagctttcttgaacttc 46
|||||| ||||||||||||||||||||||||
Sbjct: 102 gccatgtttttccacagctttcttgaacttc 72
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 18 catgcttttccacagctttcttgaacttctt 48
|||||| |||||| |||||||||||||||||
Sbjct: 3 catgctattccacggctttcttgaacttctt 33
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 87 gaagttcaagaaagctgtgggaaaccatggc 117
|||||||||||||||||||| ||| ||||||
Sbjct: 72 gaagttcaagaaagctgtggaaaaacatggc 102
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 18 catgcttttccacagctttcttgaactt 45
||||||||||||| ||||||||||||||
Sbjct: 1 catgcttttccacggctttcttgaactt 28
>51740_ptc-miR396g:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 18 catgcttttccacagctttcttgaactt 45
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
>51564_pta-miR396:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cttttccacagctttcttgaactt 45
||||||||||||||||||||||||
Sbjct: 14 cttttccacagctttcttgaactt 37
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 12 tcctgccatgcttttccacagctttcttgaactt 45
|||| ||||||||| |||||| ||||||||||||
Sbjct: 116 tcctaccatgctttcccacagttttcttgaactt 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 88 aagttcaagaaagctgtgggaaaccatgg 116
|||||||||||| |||||||||| |||||
Sbjct: 83 aagttcaagaaaactgtgggaaagcatgg 111
>47009_ath-miR396b:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cttttccacagctttcttgaactt 45
||||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaactt 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 87 gaagttcaagaaagctgtgggaaaccatg 115
|||| ||||||||||||||||||| ||||
Sbjct: 104 gaagctcaagaaagctgtgggaaaacatg 132
>48374_bna-miR396a:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaactt 45
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46888_aqc-miR396b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaactt 45
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 ttccacagctttcttgaact 44
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
