miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54829_vvi-miR171b:pmrd
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 6 tggggggaggtattggcgtgcctcaatttaaagacatggttagatgaagagatattagcc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggggggaggtattggcgtgcctcaatttaaagacatggttagatgaagagatattagcc 60
Query: 66 atgtgatttgattgagccgcgtcaatatctccttttgca 104
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgtgatttgattgagccgcgtcaatatctccttttgca 99
>48566_gma-miR170n:pmrd
Length = 80
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 13 aggtattggcgtgcctcaatttaaagacatggtta 47
|||||||||||||||||||||| ||||||||||||
Sbjct: 1 aggtattggcgtgcctcaatttgaagacatggtta 35
>54459_sbi-miR171h:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 62 agccatgtgatttgattgagccgcgtcaatatctc 96
|||||||| || ||||||||||||||||||||||
Sbjct: 47 agccatgttcttggattgagccgcgtcaatatctc 81
>48903_osa-miR171i:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 gattgagccgcgtcaatatctc 96
||||||||||||||||||||||
Sbjct: 89 gattgagccgcgtcaatatctc 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 gaggtattggcgtgcctcaat 32
|||||||||||||||||||||
Sbjct: 7 gaggtattggcgtgcctcaat 27
>51692_ptc-miR171i:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 tgatttgattgagccgcgtcaatatctc 96
|||||||||||||||| | |||||||||
Sbjct: 95 tgatttgattgagccgtgccaatatctc 122
