miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54777_vvi-miR159c:pmrd
Length = 190
Score = 329 bits (166), Expect = 5e-91
Identities = 184/190 (96%)
Strand = Plus / Plus
Query: 4 ttttggagtggccttccttgaagtccaatagagggtcttactgggtagattcatctgctg 63
||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 1 ttttggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctg 60
Query: 64 acttatggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acttatggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttg 120
Query: 124 catctctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctcta 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catatctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctcta 180
Query: 184 cacctctctc 193
||||||||||
Sbjct: 181 cacctctctc 190
>54378_pvu-miR159:pmrd
Length = 174
Score = 61.9 bits (31), Expect = 2e-10
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
||||||||||||||| |||| ||||||||||| |||| | ||||| | |||||||||||
Sbjct: 8 tccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggatccca 67
Query: 78 cag 80
|||
Sbjct: 68 cag 70
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 156 atccttgtttggattgaagggagctctac 184
|||||| ||||||||||||||||||||||
Sbjct: 146 atccttctttggattgaagggagctctac 174
>54377_pvu-miR159:pmrd
Length = 174
Score = 61.9 bits (31), Expect = 2e-10
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
||||||||||||||| |||| ||||||||||| |||| | ||||| | |||||||||||
Sbjct: 8 tccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggatccca 67
Query: 78 cag 80
|||
Sbjct: 68 cag 70
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 156 atccttgtttggattgaagggagctctac 184
|||||| ||||||||||||||||||||||
Sbjct: 146 atccttctttggattgaagggagctctac 174
>51603_ptc-miR159b:pmrd
Length = 187
Score = 61.9 bits (31), Expect = 2e-10
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 118 ggcttgcatctctcaggagctgcattatccaagtttagatccttgtttggattgaaggga 177
||||||||| ||||||||||| |||| | || ||||||| || |||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaaggga 172
Query: 178 gctctacacct 188
|||||| ||||
Sbjct: 173 gctctaaacct 183
Score = 60.0 bits (30), Expect = 7e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
|||||||||||||||||| | || | |||||||||| | ||||||| |||| ||||||
Sbjct: 17 tccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaatccca 76
Query: 78 cagccctatc 87
||||||||||
Sbjct: 77 cagccctatc 86
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 60.0 bits (30), Expect = 7e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatcc 75
|||||||||||||||||||| |||| ||||||||||| | ||||| | |||||||||
Sbjct: 12 tccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggatcc 69
Score = 60.0 bits (30), Expect = 7e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcattatccaagtttagatccttgttt 165
||||||| ||| ||||||||| ||||||||||| ||| | || |||||||| | |||
Sbjct: 92 ggataggtttgcggcttgcatatctcaggagctttattgcctaatgttagatcccttttt 151
Query: 166 ggattgaagggagctcta 183
||||||||||||||||||
Sbjct: 152 ggattgaagggagctcta 169
>51604_ptc-miR159c:pmrd
Length = 183
Score = 60.0 bits (30), Expect = 7e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatcc 75
|||||||||||||||||||| |||| ||||||||||| | ||||| | |||||||||
Sbjct: 17 tccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggatcc 74
Score = 60.0 bits (30), Expect = 7e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcattatccaagtttagatccttgttt 165
||||||| ||| ||||||||| ||||||||||| ||| | || |||||||| | |||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaatgttagatcccttttt 156
Query: 166 ggattgaagggagctcta 183
||||||||||||||||||
Sbjct: 157 ggattgaagggagctcta 174
>51602_ptc-miR159a:pmrd
Length = 183
Score = 60.0 bits (30), Expect = 7e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatcc 75
|||||||||||||||||||| |||| ||||||||||| | ||||| | |||||||||
Sbjct: 17 tccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggatcc 74
Score = 60.0 bits (30), Expect = 7e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcattatccaagtttagatccttgttt 165
||||||| ||| ||||||||| ||||||||||| ||| | || |||||||| | |||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaatgttagatcccttttt 156
Query: 166 ggattgaagggagctcta 183
||||||||||||||||||
Sbjct: 157 ggattgaagggagctcta 174
>48824_osa-miR159f:pmrd
Length = 188
Score = 60.0 bits (30), Expect = 7e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacacctctctc 193
||||||||||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacacctctctc 188
>48539_gma-miR159a:pmrd
Length = 214
Score = 54.0 bits (27), Expect = 4e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
||||||||||||||| |||| ||||||||||| ||| | ||||| | |||||||||||
Sbjct: 27 tccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatggatccca 86
Query: 78 cag 80
|||
Sbjct: 87 cag 89
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 158 ccttgtttggattgaagggagctctacacc 187
|||| |||||||||||||||||||||||||
Sbjct: 170 ccttctttggattgaagggagctctacacc 199
>48686_ltu-miR159:pmrd
Length = 345
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacacc 187
|||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctacacc 25
>48701_mtr-miR159c:pmrd
Length = 44
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctaca 23
>48395_bra-miR159a:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctctaca 185
>48339_bna-miR159:pmrd
Length = 183
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctctaca 183
>54931_zma-miR159b:pmrd
Length = 221
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 180 tgtttggattgaagggagctct 201
>54673_tae-miR159a:pmrd
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctct 173
>48821_osa-miR159c:pmrd
Length = 197
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacacctctctc 193
|||||||||||||||||| ||| |||||||
Sbjct: 168 ttggattgaagggagctccacatctctctc 197
>48728_mtr-miR319b:pmrd
Length = 42
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctaca 185
||||||||||||||||||||||
Sbjct: 1 ttggattgaagggagctctaca 22
>48657_hvv-miR159b:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctct 182
||||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctct 173
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctac 184
||||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctctac 184
>54674_tae-miR159b:pmrd
Length = 255
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcat 142
|||||||||| |||||||||| | ||||||||||||
Sbjct: 174 ggataggcttatggcttgcatgccccaggagctgcat 210
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 230 tttggattgaagggagctct 249
>54540_sly-miR159:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctcta 183
|||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctcta 177
>48825_osa-miR159m:pmrd
Length = 249
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcat 142
|||||||||| |||||||||| | ||||||||||||
Sbjct: 173 ggataggcttatggcttgcatgccccaggagctgcat 209
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 229 tttggattgaagggagctct 248
>48819_osa-miR159a:pmrd
Length = 272
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcat 142
|||||||||| |||||||||| | ||||||||||||
Sbjct: 186 ggataggcttatggcttgcatgccccaggagctgcat 222
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctct 261
>48796_oru-miR159:pmrd
Length = 274
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcat 142
|||||||||| |||||||||| | ||||||||||||
Sbjct: 186 ggataggcttatggcttgcatgccccaggagctgcat 222
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctct 261
>48699_mtr-miR159a:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctcta 183
|||||||||||||||||||||
Sbjct: 148 tttggattgaagggagctcta 168
>46932_ath-miR159b:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacacctctc 191
|||||||||||||||||||| || |||||
Sbjct: 168 tttggattgaagggagctcttcatctctc 196
>54937_zma-miR159m:pmrd
Length = 457
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>54930_zma-miR159a:pmrd
Length = 246
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 207 tttggattgaagggagctct 226
>54653_spr-miR159:pmrd
Length = 392
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>54631_sof-miR159d:pmrd
Length = 265
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 226 tttggattgaagggagctct 245
>54629_sof-miR159b:pmrd
Length = 266
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 227 tttggattgaagggagctct 246
>54628_sof-miR159a:pmrd
Length = 265
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 226 tttggattgaagggagctct 245
>54392_sar-miR159:pmrd
Length = 175
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 155 tttggattgaagggagctct 174
>51338_pgl-miR159:pmrd
Length = 226
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gataggcttgtggcttgcat 126
||||||||||||||||||||
Sbjct: 150 gataggcttgtggcttgcat 169
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 206 tttggattgaagggagctct 225
>48820_osa-miR159b:pmrd
Length = 188
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>48656_hvv-miR159a:pmrd
Length = 303
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctct 182
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 gtttggattgaagggagctc 181
||||||||||||||||||||
Sbjct: 194 gtttggattgaagggagctc 213
