miRNEST 2.0, an integrative microRNA resource :: BLAST
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 92 tttgcggttcaataaagctgtgggaagatagagacag 128
|||||||||||||||||||||||||||||| ||||||
Sbjct: 124 tttgcggttcaataaagctgtgggaagatacagacag 160
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaactgca 52
||||||||||| ||||||||||||||||
Sbjct: 13 tattcttccacagctttcttgaactgca 40
>48680_lja-miR396:pmrd
Length = 108
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 15 gtcctctttctattcttccacggctttcttgaactgcat 53
||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1 gtcctctttgtattcttccacagctttcttgaactgcat 39
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 92 tttgcggttcaataaagctgtgggaagata 121
||||||||||||||||||||||||||||||
Sbjct: 70 tttgcggttcaataaagctgtgggaagata 99
>48578_gma-miR396a:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 92 tttgcggttcaataaagctgtgggaagatagagacaggatcaa 134
|||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 97 tttgcggttcaataaagctgtgggaagatacagatagggtcaa 139
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 18 ctctttctattcttccacggctttcttgaactgcat 53
|||||| ||||||||||| |||||||||||||||||
Sbjct: 9 ctctttgtattcttccacagctttcttgaactgcat 44
>47008_ath-miR396a:pmrd
Length = 151
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 92 tttgcggttcaataaagctgtgggaagatagagac 126
|||||||||||||||||||||||||||||| ||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagatacagac 151
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaactgca 52
||||||||||| ||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
>54871_vvi-miR396d:pmrd
Length = 120
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 93 ttgcggttcaataaagctgtgggaagata 121
|||||||||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagata 113
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 20 ctttctattcttccacggctttcttgaactgcat 53
|||| ||||||||||| |||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
>51734_ptc-miR396a:pmrd
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 93 ttgcggttcaataaagctgtgggaagata 121
|||||||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagata 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaactgca 52
||||||||||| ||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 94 tgcggttcaataaagctgtgggaagata 121
||||||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagata 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacggctttcttgaactgca 52
||||||||||| ||||||||||||||||
Sbjct: 4 tattcttccacagctttcttgaactgca 31
>51735_ptc-miR396b:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 94 tgcggttcaataaagctgtgggaagata 121
||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagata 129
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 ctttctattcttccacggctttcttgaactgca 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
>46887_aqc-miR396a:pmrd
Length = 122
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 91 ctttgcggttcaataaagctgtgggaa 117
|||||||||||||||||||||||||||
Sbjct: 95 ctttgcggttcaataaagctgtgggaa 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaactgcatgg 55
|||||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatgg 26
>48486_gcl-miR396b:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 92 tttgcggttcaataaagctgtggga 116
|||||||||||||||||||||||||
Sbjct: 77 tttgcggttcaataaagctgtggga 101
>48485_gcl-miR396a:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 92 tttgcggttcaataaagctgtggga 116
|||||||||||||||||||||||||
Sbjct: 25 tttgcggttcaataaagctgtggga 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 30 ttccacggctttcttgaactgcat 53
|||||| |||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcat 78
>48508_ghr-miR396c:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgcggttcaataaagctgtggga 116
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>48507_ghr-miR396b:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgcggttcaataaagctgtggga 116
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>55074_zma-miR396c:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcatg 54
|||||||| ||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcatg 28
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 83 gttcaataaagctgtgggaa 102
>55072_zma-miR396a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcatg 54
|||||||| ||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatg 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>54485_sbi-miR396a:pmrd
Length = 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcatg 54
|||||||| ||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatg 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>55079_zma-miR396h:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 95 gttcaataaagctgtgggaa 114
>55073_zma-miR396b:pmrd
Length = 136
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>54645_sof-miR396:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>48946_osa-miR396b:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgcat 53
|||||||| |||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>55081_zma-miR396j:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaactgcatg 54
|||||| ||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatg 25
>55080_zma-miR396i:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaactgcatg 54
|||||| ||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatg 25
>52919_ptc-miRf11097-akr:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 30 ttccacggctttcttgaactg 50
|||||||||||||||||||||
Sbjct: 112 ttccacggctttcttgaactg 92
>51739_ptc-miR396f:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaactg 50
|||||||||||||||||||||
Sbjct: 11 ttccacggctttcttgaactg 31
>48945_osa-miR396a:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 tcttccacggctttcttgaactgca 52
|||||||| ||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98 gttcaataaagctgtgggaa 117
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaactgcat 53
|||||| |||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaact 49
||||||||||||||||||||
Sbjct: 8 ttccacggctttcttgaact 27
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaact 49
||||||||||||||||||||
Sbjct: 10 ttccacggctttcttgaact 29
>51740_ptc-miR396g:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacggctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacggctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacggctttcttgaact 49
||||||||||||||||||||
Sbjct: 94 ttccacggctttcttgaact 75
