miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54499_sbi-miR408:pmrd
Length = 205
Score = 391 bits (197), Expect = e-109
Identities = 203/205 (99%)
Strand = Plus / Plus
Query: 44 acagggacgatgcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 103
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 60
Query: 104 gcttgcccacaaaatggagggacttgtcaggagaggtatcaagcagagagaaggtgcctc 163
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 gcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagagaaggtgcctc 120
Query: 164 cctggtgaaatggtgatggcctgagagagctcagctggtgtcctggtgttgttgcttcct 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cctggtgaaatggtgatggcctgagagagctcagctggtgtcctggtgttgttgcttcct 180
Query: 224 cccctgcactgcctcttccctggct 248
|||||||||||||||||||||||||
Sbjct: 181 cccctgcactgcctcttccctggct 205
>54648_sof-miR408c:pmrd
Length = 286
Score = 147 bits (74), Expect = 6e-36
Identities = 112/127 (88%), Gaps = 12/127 (9%)
Strand = Plus / Plus
Query: 152 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 199
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagctcagct 219
Query: 200 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgtcg 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 220 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgttg 279
Query: 260 accttgc 266
||||||
Sbjct: 280 cccttgc 286
Score = 79.8 bits (40), Expect = 1e-15
Identities = 63/70 (90%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 29 tgggtttgattggagacagggacgatgcagagcatgggatggggccatcaacaacaaaat 88
||||| || ||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct: 7 tgggtatggttggagacagggatgaggcagagcatgggatggggccat---caacaaaat 63
Query: 89 ttccaatttc 98
||||||||||
Sbjct: 64 ttccaatttc 73
>54647_sof-miR408b:pmrd
Length = 286
Score = 147 bits (74), Expect = 6e-36
Identities = 112/127 (88%), Gaps = 12/127 (9%)
Strand = Plus / Plus
Query: 152 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 199
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagctcagct 219
Query: 200 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgtcg 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 220 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgttg 279
Query: 260 accttgc 266
||||||
Sbjct: 280 cccttgc 286
Score = 79.8 bits (40), Expect = 1e-15
Identities = 63/70 (90%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 29 tgggtttgattggagacagggacgatgcagagcatgggatggggccatcaacaacaaaat 88
||||| || ||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct: 7 tgggtatggttggagacagggatgaggcagagcatgggatggggccat---caacaaaat 63
Query: 89 ttccaatttc 98
||||||||||
Sbjct: 64 ttccaatttc 73
>54649_sof-miR408d:pmrd
Length = 215
Score = 133 bits (67), Expect = 8e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 188 gagagctcagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggc 247
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 137 gagagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctcttccctggc 196
Query: 248 tccccaccgtcgaccttgc 266
|||||||||| | ||||||
Sbjct: 197 tccccaccgttgcccttgc 215
Score = 127 bits (64), Expect = 5e-30
Identities = 81/86 (94%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 32 gtttgattggagacagggacgatgcagagcatgggatggggccatcaacaacaaaatttc 91
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 10 gtttgattggagacagggacgaggcagagcatgggatggggccat---caacaaaatttc 66
Query: 92 caatttccgtttgcttgcccacaaaa 117
|||||||||||||||||| |||||||
Sbjct: 67 caatttccgtttgcttgctcacaaaa 92
>54646_sof-miR408a:pmrd
Length = 283
Score = 119 bits (60), Expect = 1e-27
Identities = 109/127 (85%), Gaps = 15/127 (11%)
Strand = Plus / Plus
Query: 152 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 199
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagacggctgagagctcagct 219
Query: 200 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgtcg 259
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 220 ggtgtcctg---ttgttgcttcctcccctgcactgcctcttccctggctccccaccgttg 276
Query: 260 accttgc 266
||||||
Sbjct: 277 cccttgc 283
Score = 71.9 bits (36), Expect = 3e-13
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 29 tgggtttgattggagacagggacgatgcagagcatgggatggggccatcaacaacaaaat 88
||||| || ||||||||||||| || ||||||||||||||| |||||| |||||||||
Sbjct: 7 tgggtatggttggagacagggatgaggcagagcatgggatgaggccat---caacaaaat 63
Query: 89 ttccaatttc 98
||||||||||
Sbjct: 64 ttccaatttc 73
>54650_sof-miR408e:pmrd
Length = 283
Score = 95.6 bits (48), Expect = 2e-20
Identities = 106/127 (83%), Gaps = 15/127 (11%)
Strand = Plus / Plus
Query: 152 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 199
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagacggatgagagctcagct 219
Query: 200 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgtcg 259
||||||||| ||||||||| || |||||||||| |||||||||||||||||||||| |
Sbjct: 220 ggtgtcctg---ttgttgcttacttccctgcactgactcttccctggctccccaccgttg 276
Query: 260 accttgc 266
||||||
Sbjct: 277 cccttgc 283
Score = 71.9 bits (36), Expect = 3e-13
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 29 tgggtttgattggagacagggacgatgcagagcatgggatggggccatcaacaacaaaat 88
||||| || ||||||||||||| || ||||||||||||||| |||||| |||||||||
Sbjct: 7 tgggtatggttggagacagggatgaggcagagcatgggatgaggccat---caacaaaat 63
Query: 89 ttccaatttc 98
||||||||||
Sbjct: 64 ttccaatttc 73
>48975_osa-miR408:pmrd
Length = 213
Score = 77.8 bits (39), Expect = 4e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 210 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 252
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
Score = 60.0 bits (30), Expect = 1e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 40 ggagacagggacgatgcagagcatgggatggggccatcaaca 81
||||||||||| || ||||||||||||||||||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
>55104_zma-miR408:pmrd
Length = 191
Score = 75.8 bits (38), Expect = 2e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 209 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 250
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggctcc 175
Score = 65.9 bits (33), Expect = 2e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 38 ttggagacagggacgatgcagagcatgggatggggccatcaacaa 82
||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaa 60
>54690_tae-miR408:pmrd
Length = 187
Score = 61.9 bits (31), Expect = 3e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 210 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 252
|||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggctcccc 161
>48428_cpt-miR408:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 220 tcctcccctgcactgcctcttccctggctc 249
||||||| ||||||||||||||||||||||
Sbjct: 63 tcctcccatgcactgcctcttccctggctc 92
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 224 cccctgcactgcctcttccctggct 248
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 228 tgcactgcctcttccctggctccc 251
||||||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctccc 2
>47031_ath-miR408:pmrd
Length = 218
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggctccc 251
||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggctc 249
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggctc 249
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggct 248
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggct 248
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggct 248
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggct 248
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 228 tgcactgcctcttccctggct 248
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
