miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48412_bra-miR1885:pmrd
          Length = 320

 Score =  256 bits (129), Expect = 1e-68
 Identities = 153/161 (95%)
 Strand = Plus / Plus

                                                                       
Query: 274 atcctctaattgcttgtaagagctgatcaccaatggatcattcgctattgatctcttcat 333
           ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 160 atcctctaattgcttgtaagagctgatgaccaatggatcatcctctattgatctcttcat 219

                                                                       
Query: 334 caatgaaaggtatgattccctttctttgaaattccttttgaatgtgactgagaaagcttc 393
           ||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||| ||
Sbjct: 220 caatgaaaggtatgattccctttctttgaaatcacttttgaatgtgactaagaaagcctc 279

                                                    
Query: 394 tatgtacatcttctccgcggaagctcatgaaaacaaggtag 434
           || ||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tacgtacatcttctccgcggaagctcatgaaaacaaggtag 320



 Score =  214 bits (108), Expect = 5e-56
 Identities = 138/147 (93%), Gaps = 2/147 (1%)
 Strand = Plus / Plus

                                                                       
Query: 61  catcctgtcttcacgagcttcctctagaagatgtgcgcagagtctttctaagtcacactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcctgtcttcacgagcttcctctagaagatgtgcgcagagtctttctaagtcacactc 60

                                                                       
Query: 121 ataaagagttcaaagaaaaggaatcacactttcattgataatgaaatcaat--agagaat 178
           ||||| | |||||||||||||||||| ||||||||||||||||||||||||  |||||||
Sbjct: 61  ataaaaaattcaaagaaaaggaatcatactttcattgataatgaaatcaatagagagaat 120

                                      
Query: 179 gctactgagctcctacaggcgattaga 205
           | |||||||||| ||||  ||||||||
Sbjct: 121 gatactgagctcttacattcgattaga 147



 Score = 48.1 bits (24), Expect = 7e-06
 Identities = 77/92 (83%), Gaps = 2/92 (2%)
 Strand = Plus / Minus

                                                                       
Query: 86  agaagatgtgcgcagagtctttctaagtcacactcataaa-gagttcaaagaaaaggaat 144
           ||||||||| || |||| |||||| ||||||| ||| ||  || |||||||||| |||||
Sbjct: 293 agaagatgtacgtagaggctttcttagtcacattcaaaagtgatttcaaagaaagggaat 234

                                           
Query: 145 cacac-tttcattgataatgaaatcaatagag 175
           || || |||||||||| | || ||||||||||
Sbjct: 233 catacctttcattgatgaagagatcaatagag 202



 Score = 44.1 bits (22), Expect = 1e-04
 Identities = 41/46 (89%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                         
Query: 318 ctattgatctcttcatcaatgaaaggtatgattccctttctttgaa 363
           |||||||| || | |||||||||| |||||||||| ||||||||||
Sbjct: 113 ctattgatttcattatcaatgaaa-gtatgattccttttctttgaa 69