miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51806_ptc-miR530a:pmrd
Length = 144
Score = 285 bits (144), Expect = 5e-78
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 6 accaacatggcattcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 accaacatggcattcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaa 85
Query: 66 cttacttttggttttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 cttacttttggttttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaa 25
Query: 126 tgcagataaaggcaacatgttggc 149
||||||||||||||||||||||||
Sbjct: 24 tgcagataaaggcaacatgttggc 1
>52847_ptc-miRf11025-akr:pmrd
Length = 138
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 9 aacatggcattcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaactt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aacatggcattcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaactt 79
Query: 69 acttttggttttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaatgc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 acttttggttttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaatgc 19
Query: 129 agataaaggcaacatgtt 146
||||||||||||||||||
Sbjct: 18 agataaaggcaacatgtt 1
>52848_ptc-miRf11026-akr:pmrd
Length = 124
Score = 246 bits (124), Expect = 4e-66
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 15 gcattcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaacttactttt 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gcattcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaacttactttt 65
Query: 75 ggttttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaatgcagataa 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ggttttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaatgcagataa 5
Query: 135 aggc 138
||||
Sbjct: 4 aggc 1
>51904_ptc-miRf10082-akr:pmrd
Length = 118
Score = 234 bits (118), Expect = 2e-62
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 18 ttcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaacttacttttggt 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ttcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaacttacttttggt 59
Query: 78 tttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaatgcagataaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaatgcagataaa 1
>51807_ptc-miR530b:pmrd
Length = 172
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 114 tgcaggtgcaaatgcagataaaggcaacatgttggc 149
|||||||||||||||||||||||||||||| |||||
Sbjct: 36 tgcaggtgcaaatgcagataaaggcaacatattggc 1
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 6 accaacatggcattcacctgcacctgcacctgcacctcaa 45
||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 172 accaaaatggcattcacctgcacttgcacctgcacctcaa 133
>53341_ptc-miRf11519-akr:pmrd
Length = 152
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 15 gcattcacctgcacctgcacctgcacctcaa 45
|||||||||||||| ||||||||||||||||
Sbjct: 152 gcattcacctgcacttgcacctgcacctcaa 122
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 114 tgcaggtgcaaatgcagataaaggc 138
|||||||||||||||||||||||||
Sbjct: 25 tgcaggtgcaaatgcagataaaggc 1
>49892_osa-miRf10677-akr:pmrd
Length = 153
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 111 aggtgcaggtgcaaatgcag 130
||||||||||||||||||||
Sbjct: 27 aggtgcaggtgcaaatgcag 8
