miRNEST 2.0, an integrative microRNA resource :: BLAST
>53966_ptc-miRf12144-akr:pmrd
Length = 77
Score = 85.7 bits (43), Expect = 4e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 12 ccgaaccgaaccgaaccgaaattatttggtttgaactggttttcggttcggttcggttc 70
|||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct: 9 ccgaactgaaccgaaccgaaattaatcggtttgaaccggttttcggttcggttcggttc 67
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 ccgaaccgaaccgaaccgaaa 32
|||||||||||||||||||||
Sbjct: 69 ccgaaccgaaccgaaccgaaa 49
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 12 ccgaaccgaaccgaaccgaa 31
||||||||||||||||||||
Sbjct: 74 ccgaaccgaaccgaaccgaa 55
>54306_ptc-miRf12484-akr:pmrd
Length = 100
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 42 ttgaactggttttcggttcggttcggttcaaaaaattaaaa 82
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgaaccggttttcggttcggttcggttcaaaaaattaaaa 41
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 14 gaaccgaaccgaaccgaaa 32
|||||||||||||||||||
Sbjct: 29 gaaccgaaccgaaccgaaa 11
>54036_ptc-miRf12214-akr:pmrd
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 49 ggttttcggttcggttcggttcaaaaaattaaaa 82
||||||||||||||||||||||||||||||||||
Sbjct: 3 ggttttcggttcggttcggttcaaaaaattaaaa 36
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 14 gaaccgaaccgaaccgaaa 32
|||||||||||||||||||
Sbjct: 24 gaaccgaaccgaaccgaaa 6
>53555_ptc-miRf11733-akr:pmrd
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 49 ggttttcggttcggttcggttcaaaaaattaaaa 82
||||||||||||||||||||||||||||||||||
Sbjct: 3 ggttttcggttcggttcggttcaaaaaattaaaa 36
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 14 gaaccgaaccgaaccgaaa 32
|||||||||||||||||||
Sbjct: 24 gaaccgaaccgaaccgaaa 6
>53388_ptc-miRf11566-akr:pmrd
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 49 ggttttcggttcggttcggttcaaaaaattaaaa 82
||||||||||||||||||||||||||||||||||
Sbjct: 8 ggttttcggttcggttcggttcaaaaaattaaaa 41
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 14 gaaccgaaccgaaccgaaa 32
|||||||||||||||||||
Sbjct: 29 gaaccgaaccgaaccgaaa 11
>53686_ptc-miRf11864-akr:pmrd
Length = 69
Score = 65.9 bits (33), Expect = 4e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 14 gaaccgaaccgaaccgaaattatttggtttgaactggttttcggttcggttcggttc 70
|||| ||| ||||||||||||| | ||||||||| ||||||||||||| ||||||||
Sbjct: 7 gaactgaatcgaaccgaaattaatcggtttgaaccggttttcggttcgattcggttc 63
>51832_ptc-miRf10010-akr:pmrd
Length = 97
Score = 61.9 bits (31), Expect = 6e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 43 tgaactggttttcggttcggttcggttcaaaaaat 77
||||| |||||||||||||||||||||||||||||
Sbjct: 97 tgaaccggttttcggttcggttcggttcaaaaaat 63
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14 gaaccgaaccgaaccgaaa 32
|||||||||||||||||||
Sbjct: 70 gaaccgaaccgaaccgaaa 88
>52930_ptc-miRf11108-akr:pmrd
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 48/53 (90%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 12 ccgaaccgaaccgaaccgaaattatttggtttgaactggttttcggttcggtt 64
||||||||||||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 19 ccgaaccgaaccgaaccgaaact-gttggtttgaaccgg-tttcggttcggtt 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ccgaaccgaaccgaaccgaa 31
||||||||||||||||||||
Sbjct: 9 ccgaaccgaaccgaaccgaa 28
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ccgaaccgaaccgaaccgaa 31
||||||||||||||||||||
Sbjct: 14 ccgaaccgaaccgaaccgaa 33
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 52 tttcggttcggttcggttc 70
|||||||||||||||||||
Sbjct: 39 tttcggttcggttcggttc 21
>53731_ptc-miRf11909-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 4e-06
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 14 gaaccgaaccgaaccgaaattatttggtttgaactggttttcggttcggtt 64
||||||||||||||||||| | | ||||||||| || |||||||||||||
Sbjct: 10 gaaccgaaccgaaccgaaactggtcggtttgaaccgg-tttcggttcggtt 59
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 52 tttcggttcggttcggttca 71
||||||||||||||||||||
Sbjct: 28 tttcggttcggttcggttca 9
>53395_ptc-miRf11573-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 4e-06
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 14 gaaccgaaccgaaccgaaattatttggtttgaactggttttcggttcggtt 64
||||||||||||||||||| | | ||||||||| || |||||||||||||
Sbjct: 10 gaaccgaaccgaaccgaaactggtcggtttgaaccgg-tttcggttcggtt 59
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 52 tttcggttcggttcggttca 71
||||||||||||||||||||
Sbjct: 28 tttcggttcggttcggttca 9
>52512_ptc-miRf10690-akr:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 52 tttcggttcggttcggttcaaa 73
||||||||||||||||||||||
Sbjct: 39 tttcggttcggttcggttcaaa 18
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14 gaaccgaaccgaaccgaaa 32
|||||||||||||||||||
Sbjct: 21 gaaccgaaccgaaccgaaa 39
>54220_ptc-miRf12398-akr:pmrd
Length = 69
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 ccgaaccgaaccgaaccgaaa 32
|||||||||||||||||||||
Sbjct: 5 ccgaaccgaaccgaaccgaaa 25
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 52 tttcggttcggttcggttc 70
|||||||||||||||||||
Sbjct: 25 tttcggttcggttcggttc 7
>53947_ptc-miRf12125-akr:pmrd
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 45/52 (86%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 13 cgaaccgaaccgaaccgaaattatttggtttgaactggttttcggttcggtt 64
|||| ||||||||||||||| | | ||||||||| || |||||||||||||
Sbjct: 9 cgaatcgaaccgaaccgaaaccagtcggtttgaaccgg-tttcggttcggtt 59
>54349_ptc-miRf12527-akr:pmrd
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 46/55 (83%)
Strand = Plus / Plus
Query: 15 aaccgaaccgaaccgaaattatttggtttgaactggttttcggttcggttcggtt 69
||||||||||||||||| || ||||||||| || |||||||| ||||||||
Sbjct: 7 aaccgaaccgaaccgaaccggttcggtttgaaccggaattcggttcagttcggtt 61
>54339_ptc-miRf12517-akr:pmrd
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 aaccgaaccgaaccgaaat 33
|||||||||||||||||||
Sbjct: 22 aaccgaaccgaaccgaaat 4
>54074_ptc-miRf12252-akr:pmrd
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 aaccgaaccgaaccgaaat 33
|||||||||||||||||||
Sbjct: 22 aaccgaaccgaaccgaaat 4
>53625_ptc-miRf11803-akr:pmrd
Length = 152
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 ttttcggttcggttcggtt 69
|||||||||||||||||||
Sbjct: 80 ttttcggttcggttcggtt 98
