miRNEST 2.0, an integrative microRNA resource :: BLAST
>51651_ptc-miR168b:pmrd
Length = 136
Score = 262 bits (132), Expect = 8e-71
Identities = 135/136 (99%)
Strand = Plus / Plus
Query: 16 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 76 taaacacgattggctgtgaggcaaattataaaaagaaaaagaattggatcccgccttgca 135
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 taaacacgattggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgca 120
Query: 136 tcaactgaatcggaga 151
||||||||||||||||
Sbjct: 121 tcaactgaatcggaga 136
>54374_pts-miR168a:pmrd
Length = 118
Score = 210 bits (106), Expect = 2e-55
Identities = 115/118 (97%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctaaacacgat 85
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggctaaacacgat 60
Query: 86 tggctgtgaggcaaattataaaaagaaaaagaattggatcccgccttgcatcaactga 143
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 118
>54366_ptr-miR168:pmrd
Length = 118
Score = 210 bits (106), Expect = 2e-55
Identities = 115/118 (97%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctaaacacgat 85
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggctaaacacgat 60
Query: 86 tggctgtgaggcaaattataaaaagaaaaagaattggatcccgccttgcatcaactga 143
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 118
>51650_ptc-miR168a:pmrd
Length = 160
Score = 113 bits (57), Expect = 4e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 16 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 75
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 76 t 76
|
Sbjct: 61 t 61
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 116 gaattggatcccgccttgcatcaactgaatcggag 150
|||||||||||||||||||||||||||||||||||
Sbjct: 125 gaattggatcccgccttgcatcaactgaatcggag 159
>54375_pts-miR168b:pmrd
Length = 140
Score = 93.7 bits (47), Expect = 4e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 76
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagctggct 51
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 116 gaattggatcccgccttgcatcaactga 143
||||||||||||||||||||||||||||
Sbjct: 113 gaattggatcccgccttgcatcaactga 140
>54388_rco-miR168:pmrd
Length = 156
Score = 89.7 bits (45), Expect = 6e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 8 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 45
Score = 77.8 bits (39), Expect = 2e-15
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 116 gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaag 162
|||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtgaag 156
>48560_gma-miR168:pmrd
Length = 125
Score = 83.8 bits (42), Expect = 4e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 116 gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaa 161
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 79 gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 124
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 14 gcggtctctaattcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>46958_ath-miR168b:pmrd
Length = 124
Score = 73.8 bits (37), Expect = 4e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 8 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 45
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 124 tcccgccttgcatcaactgaatcggagaccgcggtga 160
||||| |||| |||||||||||||||| ||| |||||
Sbjct: 88 tcccgtcttgtatcaactgaatcggagtccgaggtga 124
>54802_vvi-miR168:pmrd
Length = 132
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 16 ggtctctaattcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 122 gatcccgccttgcatcaactgaatcggagac 152
|||||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggagac 129
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 118 attggatcccgccttgcatcaactgaatcgga 149
||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcgga 122
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaactgattcggc 56
|||||||||||||||||||||||| |||||||
Sbjct: 11 attcgcttggtgcaggtcgggaaccaattcggc 43
>46957_ath-miR168a:pmrd
Length = 138
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 118 attggatcccgccttgcatcaactgaatcgga 149
||||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcgga 127
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaactgattcggc 56
|||||||||||||||||||||||| |||||||
Sbjct: 16 attcgcttggtgcaggtcgggaaccaattcggc 48
>48349_bna-miR168:pmrd
Length = 133
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 12 cggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
|||||| |||| | |||||||||||||||||||||||||||
Sbjct: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgatt 44
>55000_zma-miR168b:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>46959_ath-miR168m:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 118 attggatcccgccttgcatcaactga 143
||||||||||||||||||||||||||
Sbjct: 79 attggatcccgccttgcatcaactga 104
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaactgattcggc 56
|||||||||||||||||||||| |||||||
Sbjct: 1 tcgcttggtgcaggtcgggaaccaattcggc 31
>54546_sly-miR168:pmrd
Length = 145
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaactgattcggcg 57
|||||||||||||||||||| || ||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacctcattcggcg 32
>48649_hte-miR168:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaactg 49
||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactg 24
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54637_sof-miR168b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>54636_sof-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>48873_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 119 ttggatcccgccttgcatcaactga 143
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcggga 45
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
