miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54381_pvu-miR399a:pmrd
Length = 223
Score = 250 bits (126), Expect = 2e-67
Identities = 129/130 (99%)
Strand = Plus / Plus
Query: 1 gatattatagtcaataagcaaaccagttatagggcttctctttgttggcaggaaacgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8 gatattatagtcaataagcaaaccagttatagggcttctctttgttggcaggaaatgaca 67
Query: 61 tgaccacttcatgaaatatcttgccaaaggagagttgccctgttgctgctttagcttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tgaccacttcatgaaatatcttgccaaaggagagttgccctgttgctgctttagcttaat 127
Query: 121 atgtaatctt 130
||||||||||
Sbjct: 128 atgtaatctt 137
>48756_mtr-miR399g:pmrd
Length = 74
Score = 52.0 bits (26), Expect = 1e-07
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 30 tagggcttctctttgttggcaggaaacga-catgaccacttcatgaaatatcttgccaaa 88
|||||||||||||| ||||||||||| | | |||||| | ||| | | ||||||||||
Sbjct: 1 tagggcttctctttcttggcaggaaattatcctgaccattccatcatgtgtcttgccaaa 60
Query: 89 ggagagttgccctg 102
||||||||||||||
Sbjct: 61 ggagagttgccctg 74
>54878_vvi-miR399b:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 cttgccaaaggagagttgccctgt 103
||||||||||||||||||||||||
Sbjct: 85 cttgccaaaggagagttgccctgt 108
>47017_ath-miR399c:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 cttgccaaaggagagttgccctgt 103
||||||||||||||||||||||||
Sbjct: 82 cttgccaaaggagagttgccctgt 105
>51755_ptc-miR399i:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 79 tcttgccaaaggagagttgccct 101
|||||||||||||||||||||||
Sbjct: 76 tcttgccaaaggagagttgccct 98
>55095_zma-miR399e:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 85 tgccaaaggagagttgccctgt 106
>54879_vvi-miR399c:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 52 tgccaaaggagagttgccctgt 73
>54497_sbi-miR399i:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 82 tgccaaaggagagttgccctgt 103
>55098_zma-miR399h:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctg 102
|||||||||||||||||||||
Sbjct: 65 tgccaaaggagagttgccctg 85
>54885_vvi-miR399i:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 gccaaaggagagttgccctgt 103
|||||||||||||||||||||
Sbjct: 93 gccaaaggagagttgccctgt 113
>54492_sbi-miR399d:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctg 102
|||||||||||||||||||||
Sbjct: 166 tgccaaaggagagttgccctg 186
>48967_osa-miR399d:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctg 102
|||||||||||||||||||||
Sbjct: 256 tgccaaaggagagttgccctg 276
>48088_ath-miRf10988-akr:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctg 102
|||||||||||||||||||||
Sbjct: 102 tgccaaaggagagttgccctg 122
>47473_ath-miRf10373-akr:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctg 102
|||||||||||||||||||||
Sbjct: 100 tgccaaaggagagttgccctg 120
>47472_ath-miRf10372-akr:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctg 102
|||||||||||||||||||||
Sbjct: 103 tgccaaaggagagttgccctg 123
>47016_ath-miR399b:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctg 102
|||||||||||||||||||||
Sbjct: 105 tgccaaaggagagttgccctg 125
>55102_zma-miR399l:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cttgccaaaggagagttgccctgt 103
|||||||||||||| |||||||||
Sbjct: 63 cttgccaaaggagaattgccctgt 86
>54561_sly-miR399:pmrd
Length = 71
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccct 101
||||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgccct 70
>51754_ptc-miR399h:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cttgccaaaggagagttgccctgt 103
||||||||||||||||| ||||||
Sbjct: 101 cttgccaaaggagagtttccctgt 124
>51352_ppl-miR399b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cttgccaaaggagagttgccctgt 103
||||||||||||||||| ||||||
Sbjct: 101 cttgccaaaggagagtttccctgt 124
>48973_osa-miR399j:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccct 101
||||||||||||||||||||
Sbjct: 76 tgccaaaggagagttgccct 95
>48751_mtr-miR399b:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cttgccaaaggagagttgccctgt 103
||||||||||||||| ||||||||
Sbjct: 71 cttgccaaaggagagctgccctgt 94
>46891_aqc-miR399:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccct 101
||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccct 91
