miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54381_pvu-miR399a:pmrd
Length = 223
Score = 75.8 bits (38), Expect = 7e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 85 aataacttgccaaaggagagttgccctgtggctgctttagcttaat 130
|||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 82 aatatcttgccaaaggagagttgccctgttgctgctttagcttaat 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 taagcaaaccagttatagggc 27
|||||||||||||||||||||
Sbjct: 22 taagcaaaccagttatagggc 42
>54878_vvi-miR399b:pmrd
Length = 117
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 89 acttgccaaaggagagttgccctgtggctgctt 121
|||||||||||||||||||||||||| ||||||
Sbjct: 84 acttgccaaaggagagttgccctgtgactgctt 116
>47017_ath-miR399c:pmrd
Length = 114
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 acttgccaaaggagagttgccctgt 113
|||||||||||||||||||||||||
Sbjct: 81 acttgccaaaggagagttgccctgt 105
>54879_vvi-miR399c:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctgtg 114
|||||||||||||||||||||||
Sbjct: 52 tgccaaaggagagttgccctgtg 74
>48756_mtr-miR399g:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 cttgccaaaggagagttgccctg 112
|||||||||||||||||||||||
Sbjct: 52 cttgccaaaggagagttgccctg 74
>55095_zma-miR399e:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctgt 113
||||||||||||||||||||||
Sbjct: 85 tgccaaaggagagttgccctgt 106
>54885_vvi-miR399i:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 gccaaaggagagttgccctgtg 114
||||||||||||||||||||||
Sbjct: 93 gccaaaggagagttgccctgtg 114
>54497_sbi-miR399i:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctgt 113
||||||||||||||||||||||
Sbjct: 82 tgccaaaggagagttgccctgt 103
>51755_ptc-miR399i:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 cttgccaaaggagagttgccct 111
||||||||||||||||||||||
Sbjct: 77 cttgccaaaggagagttgccct 98
>48751_mtr-miR399b:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 acttgccaaaggagagttgccctgtg 114
|||||||||||||||| |||||||||
Sbjct: 70 acttgccaaaggagagctgccctgtg 95
>55098_zma-miR399h:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctg 112
|||||||||||||||||||||
Sbjct: 65 tgccaaaggagagttgccctg 85
>54492_sbi-miR399d:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctg 112
|||||||||||||||||||||
Sbjct: 166 tgccaaaggagagttgccctg 186
>51754_ptc-miR399h:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 90 cttgccaaaggagagttgccctgtg 114
||||||||||||||||| |||||||
Sbjct: 101 cttgccaaaggagagtttccctgtg 125
>51352_ppl-miR399b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 90 cttgccaaaggagagttgccctgtg 114
||||||||||||||||| |||||||
Sbjct: 101 cttgccaaaggagagtttccctgtg 125
>48967_osa-miR399d:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctg 112
|||||||||||||||||||||
Sbjct: 256 tgccaaaggagagttgccctg 276
>48088_ath-miRf10988-akr:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctg 112
|||||||||||||||||||||
Sbjct: 102 tgccaaaggagagttgccctg 122
>47473_ath-miRf10373-akr:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctg 112
|||||||||||||||||||||
Sbjct: 100 tgccaaaggagagttgccctg 120
>47472_ath-miRf10372-akr:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctg 112
|||||||||||||||||||||
Sbjct: 103 tgccaaaggagagttgccctg 123
>47016_ath-miR399b:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctg 112
|||||||||||||||||||||
Sbjct: 105 tgccaaaggagagttgccctg 125
>55102_zma-miR399l:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 90 cttgccaaaggagagttgccctgt 113
|||||||||||||| |||||||||
Sbjct: 63 cttgccaaaggagaattgccctgt 86
>54561_sly-miR399:pmrd
Length = 71
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccct 111
||||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgccct 70
>48973_osa-miR399j:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccct 111
||||||||||||||||||||
Sbjct: 76 tgccaaaggagagttgccct 95
>46891_aqc-miR399:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccct 111
||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccct 91
