miRNEST 2.0, an integrative microRNA resource :: BLAST
>48584_gma-miR408a:pmrd
Length = 120
Score = 79.8 bits (40), Expect = 5e-16
Identities = 100/120 (83%), Gaps = 10/120 (8%)
Strand = Plus / Plus
Query: 21 gctgggaaaaggcagagcaagaatgtagctattgacagaaa-tggtgaagtgagaatgag 79
|||||||| |||||| ||| ||||| |||||| ||||||| |||| ||||||||||||
Sbjct: 1 gctgggaacaggcagggcacgaatggagctatcaacagaaaatggtaaagtgagaatgaa 60
Query: 80 aggagagagata---------tctgttgtggctacgctcatgcactgcctcttccctggc 130
|||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 aggagagagagagagaagagatctgttgtggctacgctcatgcactgcctgttccctggc 120
>48428_cpt-miR408:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 8e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 tctgttgtggctacgctcatgcactgcctcttccctggctctct 135
|||||| ||||| | | |||||||||||||||||||||||||||
Sbjct: 52 tctgttttggctcctcccatgcactgcctcttccctggctctct 95
>54892_vvi-miR408:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggctctctctct 139
||||||||||||||||||||||||| |||||
Sbjct: 76 catgcactgcctcttccctggctctgtctct 106
>51347_ppe-miR408:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 ctgttgtggctacgctcatgcactgcctcttccctggct 131
||||||||||| |||||||||||||||||||||||||
Sbjct: 58 ctgttgtggctctactcatgcactgcctcttccctggct 96
>51397_ppt-miR408b:pmrd
Length = 144
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 107 ctcatgcactgcctcttccctggct 131
|||||||||||||||||||||||||
Sbjct: 90 ctcatgcactgcctcttccctggct 114
>47031_ath-miR408:pmrd
Length = 218
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggctctctct 137
|||||||||||||||||||||||| ||||
Sbjct: 119 catgcactgcctcttccctggctccctct 147
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 109 catgcactgcctcttccctggctc 132
||||||||||||||||||||||||
Sbjct: 27 catgcactgcctcttccctggctc 4
>51762_ptc-miR408:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggct 131
|||||||||||||||||||||||
Sbjct: 75 catgcactgcctcttccctggct 97
>51566_pta-miR408:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 110 atgcactgcctcttccctggctc 132
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>46892_aqc-miR408:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 109 catgcactgcctcttccctggct 131
|||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggct 1
>55104_zma-miR408:pmrd
Length = 191
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctc 174
>54690_tae-miR408:pmrd
Length = 187
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158
>54649_sof-miR408d:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggctc 198
>54648_sof-miR408c:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>54647_sof-miR408b:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>54646_sof-miR408a:pmrd
Length = 283
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctc 266
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 atgcactgcctcttccctggct 131
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>48975_osa-miR408:pmrd
Length = 213
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggct 131
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>54389_rco-miR408:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggct 131
|||||||||||||||||||||
Sbjct: 91 tgcactgcctcttccctggct 111
>48317_bdi-miR408:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctgg 129
|||||||||||||||||||||
Sbjct: 68 catgcactgcctcttccctgg 88
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctg 128
||||||||||||||||||||
Sbjct: 60 catgcactgcctcttccctg 79
