miRNEST 2.0, an integrative microRNA resource :: BLAST
>54388_rco-miR168:pmrd
Length = 156
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 20 cggcggtctctaattcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaact 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcggtgaa 152
|||||||||||||||||||||||| || ||| ||||||
Sbjct: 118 tcccgccttgcatcaactgaatcgaagaccggggtgaa 155
>48560_gma-miR168:pmrd
Length = 125
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 22 gcggtctctaattcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcggtgaa 152
||||||||||||||||||||||||||| ||||||||||
Sbjct: 87 tcccgccttgcatcaactgaatcggaggccgcggtgaa 124
>51651_ptc-miR168b:pmrd
Length = 136
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 24 ggtctctaattcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaact 33
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggag 141
|||||||||||||||||||||||||||
Sbjct: 109 tcccgccttgcatcaactgaatcggag 135
>54802_vvi-miR168:pmrd
Length = 132
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 24 ggtctctaattcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggag 141
|||||||||||||||||||||||||||
Sbjct: 101 tcccgccttgcatcaactgaatcggag 127
>51650_ptc-miR168a:pmrd
Length = 160
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 24 ggtctctaattcgcttggtgcaggtcgggaact 56
||||||| |||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaact 33
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggag 141
|||||||||||||||||||||||||||
Sbjct: 133 tcccgccttgcatcaactgaatcggag 159
>46958_ath-miR168b:pmrd
Length = 124
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 20 cggcggtctctaattcgcttggtgcaggtcgggaact 56
|||||||||| |||||||||||||||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaact 41
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 112 agctcccgccttgcatcaactgaatcggagcccgcggtga 151
|||||||| |||| |||||||||||||||| ||| |||||
Sbjct: 85 agctcccgtcttgtatcaactgaatcggagtccgaggtga 124
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcgga 140
||||||||||||||||||||||||||
Sbjct: 97 tcccgccttgcatcaactgaatcgga 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||||
Sbjct: 11 attcgcttggtgcaggtcgggaac 34
>46957_ath-miR168a:pmrd
Length = 138
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcgga 140
||||||||||||||||||||||||||
Sbjct: 102 tcccgccttgcatcaactgaatcgga 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaac 39
>55000_zma-miR168b:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcc 143
|||||||||||||||| ||||||||||||
Sbjct: 66 tcccgccttgcatcaagtgaatcggagcc 94
>48349_bna-miR168:pmrd
Length = 133
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 20 cggcggtctctaattcgcttggtgcaggtcgggaact 56
|||||| |||| | |||||||||||||||||||||||
Sbjct: 4 cggcggcctctgactcgcttggtgcaggtcgggaact 40
>54375_pts-miR168b:pmrd
Length = 140
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaact 23
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 121 tcccgccttgcatcaactga 140
>54374_pts-miR168a:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaact 23
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 99 tcccgccttgcatcaactga 118
>54366_ptr-miR168:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaact 23
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 99 tcccgccttgcatcaactga 118
>48649_hte-miR168:pmrd
Length = 140
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaact 23
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcgg 148
|||||||||||| ||| |||||||||||| ||||
Sbjct: 66 tcccgccttgcaccaagtgaatcggagccggcgg 99
>46959_ath-miR168m:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 85 tcccgccttgcatcaactga 104
>54637_sof-miR168b:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcc 143
|||||||||||| ||| ||||||||||||
Sbjct: 65 tcccgccttgcaccaagtgaatcggagcc 93
>54636_sof-miR168a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcc 143
|||||||||||| ||| ||||||||||||
Sbjct: 66 tcccgccttgcaccaagtgaatcggagcc 94
>48873_osa-miR168a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcc 143
|||||||||||| ||| ||||||||||||
Sbjct: 58 tcccgccttgcaccaagtgaatcggagcc 86
>48872_osa-miR168a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcc 143
|||||||||||| ||| ||||||||||||
Sbjct: 58 tcccgccttgcaccaagtgaatcggagcc 86
>48871_osa-miR168a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcc 143
|||||||||||| ||| ||||||||||||
Sbjct: 58 tcccgccttgcaccaagtgaatcggagcc 86
>54665_stu-miR168:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcggga 53
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactga 134
||||||||||||||||||||
Sbjct: 114 tcccgccttgcatcaactga 133
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcggga 53
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
